KEGG   PATHWAY: ddl00020
Entry
ddl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfitobacterium dichloroeliminans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ddl00020  Citrate cycle (TCA cycle)
ddl00020

Module
ddl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ddl00020]
ddl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ddl00020]
ddl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ddl00020]
Other DBs
GO: 0006099
Organism
Desulfitobacterium dichloroeliminans [GN:ddl]
Gene
Desdi_0666  citrate synthase [KO:K01647] [EC:2.3.3.1]
Desdi_0912  aconitase A [KO:K01681] [EC:4.2.1.3]
Desdi_1264  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Desdi_2817  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Desdi_2156  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Desdi_2158  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Desdi_3108  hydro-lyase, Fe-S type, tartrate/fumarate subfamily [KO:K01677] [EC:4.2.1.2]
Desdi_3107  hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily [KO:K01678] [EC:4.2.1.2]
Desdi_0506  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Desdi_0913  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Desdi_1803  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Desdi_1804  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Desdi_1805  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Desdi_1802  2-oxoacid:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Desdi_0024  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Desdi_3423  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ddl00010  Glycolysis / Gluconeogenesis
ddl00061  Fatty acid biosynthesis
ddl00071  Fatty acid degradation
ddl00190  Oxidative phosphorylation
ddl00220  Arginine biosynthesis
ddl00250  Alanine, aspartate and glutamate metabolism
ddl00280  Valine, leucine and isoleucine degradation
ddl00350  Tyrosine metabolism
ddl00470  D-Amino acid metabolism
ddl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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