KEGG   PATHWAY: dgg00020
Entry
dgg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Megalodesulfovibrio gigas
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dgg00020  Citrate cycle (TCA cycle)
dgg00020

Module
dgg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dgg00020]
Other DBs
GO: 0006099
Organism
Megalodesulfovibrio gigas [GN:dgg]
Gene
DGI_1379  gltA; putative citrate synthase I [KO:K01647] [EC:2.3.3.1]
DGI_0640  putative pyruvate carboxyltransferase [KO:K05942] [EC:2.3.3.3]
DGI_1851  icd; putative isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DGI_1688  putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
DGI_1713  porA; putative pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DGI_0870  vorA; putative 2-ketoisovalerate ferredoxin reductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DGI_1712  porB; putative pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DGI_0871  vorB; putative thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DGI_0872  vorG; putative ketoisovalerate oxidoreductase subunit VorA [KO:K00177] [EC:1.2.7.3]
DGI_0869  vorC; putative Ferrodoxin-like protein [KO:K00176] [EC:1.2.7.3]
DGI_1569  fdrA; putative fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
DGI_0827  frdAII; putative fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
DGI_0828  frdBII; putative fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
DGI_1570  fdrB; putative succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K25995] [EC:1.3.5.1 7.1.1.12]
DGI_0826  fdrCII; putative fumarate reductase respiratory complex [KO:K25996]
DGI_1568  fdrC; putative Fumarate reductase respiratory complex [KO:K25996]
DGI_1571  fumA; putative fumarate hydratase [KO:K01677] [EC:4.2.1.2]
DGI_1573  fumC; putative Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha [KO:K01678] [EC:4.2.1.2]
DGI_3402  pycB; putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DGI_0996  poR; putative pyruvate-ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dgg00010  Glycolysis / Gluconeogenesis
dgg00053  Ascorbate and aldarate metabolism
dgg00061  Fatty acid biosynthesis
dgg00071  Fatty acid degradation
dgg00190  Oxidative phosphorylation
dgg00220  Arginine biosynthesis
dgg00250  Alanine, aspartate and glutamate metabolism
dgg00280  Valine, leucine and isoleucine degradation
dgg00350  Tyrosine metabolism
dgg00470  D-Amino acid metabolism
dgg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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