KEGG   PATHWAY: dla00630
Entry
dla00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Delftia lacustris
Class
Metabolism; Carbohydrate metabolism
Pathway map
dla00630  Glyoxylate and dicarboxylate metabolism
dla00630

Module
dla_M00012  Glyoxylate cycle [PATH:dla00630]
dla_M00621  Glycine cleavage system [PATH:dla00630]
Other DBs
GO: 0046487 0043648
Organism
Delftia lacustris [GN:dla]
Gene
I6G47_01355  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
I6G47_10465  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
I6G47_21340  malate synthase G [KO:K01638] [EC:2.3.3.9]
I6G47_12060  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6G47_12095  citrate synthase [KO:K01647] [EC:2.3.3.1]
I6G47_20650  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
I6G47_31535  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
I6G47_12015  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
I6G47_12040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I6G47_06075  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_07055  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_10175  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_17580  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_21835  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
I6G47_22680  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_25660  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_00065  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
I6G47_01435  thiolase family protein [KO:K00626] [EC:2.3.1.9]
I6G47_06070  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
I6G47_05380  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
I6G47_05385  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
I6G47_26975  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
I6G47_05395  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
I6G47_19085  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
I6G47_23795  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
I6G47_23805  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
I6G47_23220  catalase [KO:K03781] [EC:1.11.1.6]
I6G47_02570  catalase [KO:K03781] [EC:1.11.1.6]
I6G47_03025  catalase [KO:K03781] [EC:1.11.1.6]
I6G47_17515  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I6G47_25755  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I6G47_27440  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
I6G47_00550  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
I6G47_20955  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
I6G47_29620  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
I6G47_08105  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
I6G47_31025  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
I6G47_05565  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I6G47_05590  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I6G47_31280  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
I6G47_02645  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
I6G47_02655  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
I6G47_04040  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6G47_04260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6G47_06515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6G47_02650  gcvH; glycine cleavage system protein GcvH [KO:K02437]
I6G47_13945  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
I6G47_13940  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
I6G47_13935  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
I6G47_13955  glycerate kinase [KO:K11529] [EC:2.7.1.165]
I6G47_23350  aldA; aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
I6G47_12370  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I6G47_13965  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I6G47_05345  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
I6G47_14980  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
I6G47_06535  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
I6G47_14985  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
I6G47_06540  fdxH; formate dehydrogenase subunit beta [KO:K00124]
I6G47_14990  formate dehydrogenase subunit gamma [KO:K00124]
I6G47_06545  formate dehydrogenase subunit gamma [KO:K00127]
I6G47_01925  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
I6G47_13720  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
I6G47_19075  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
I6G47_22600  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
I6G47_22835  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
I6G47_26165  formamidase [KO:K01455] [EC:3.5.1.49]
I6G47_22485  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dla00010  Glycolysis / Gluconeogenesis
dla00020  Citrate cycle (TCA cycle)
dla00030  Pentose phosphate pathway
dla00053  Ascorbate and aldarate metabolism
dla00071  Fatty acid degradation
dla00230  Purine metabolism
dla00250  Alanine, aspartate and glutamate metabolism
dla00260  Glycine, serine and threonine metabolism
dla00620  Pyruvate metabolism
dla00710  Carbon fixation by Calvin cycle
dla00750  Vitamin B6 metabolism
dla00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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