KEGG   PATHWAY: drp00630
Entry
drp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Devosia rhodophyticola
Class
Metabolism; Carbohydrate metabolism
Pathway map
drp00630  Glyoxylate and dicarboxylate metabolism
drp00630

Module
drp_M00012  Glyoxylate cycle [PATH:drp00630]
drp_M00621  Glycine cleavage system [PATH:drp00630]
Other DBs
GO: 0046487 0043648
Organism
Devosia rhodophyticola [GN:drp]
Gene
PSQ90_05985  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
PSQ90_02050  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
PSQ90_14010  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
PSQ90_12165  malate synthase G [KO:K01638] [EC:2.3.3.9]
PSQ90_08900  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PSQ90_07190  citrate synthase [KO:K01647] [EC:2.3.3.1]
PSQ90_16960  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PSQ90_08680  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PSQ90_02040  thiolase family protein [KO:K00626] [EC:2.3.1.9]
PSQ90_06010  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PSQ90_11200  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
PSQ90_06210  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
PSQ90_06220  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
PSQ90_06230  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
PSQ90_13625  catalase [KO:K03781] [EC:1.11.1.6]
PSQ90_04755  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
PSQ90_10670  NAD(P)-dependent oxidoreductase [KO:K00018] [EC:1.1.1.29]
PSQ90_00290  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
PSQ90_05455  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
PSQ90_15715  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
PSQ90_01115  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
PSQ90_03520  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
PSQ90_03515  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
PSQ90_03530  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
PSQ90_08940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSQ90_16345  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSQ90_03525  gcvH; glycine cleavage system protein GcvH [KO:K02437]
PSQ90_02130  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
PSQ90_08285  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
PSQ90_06150  glycerate kinase [KO:K11529] [EC:2.7.1.165]
PSQ90_13050  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
PSQ90_11000  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PSQ90_10845  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
drp00010  Glycolysis / Gluconeogenesis
drp00020  Citrate cycle (TCA cycle)
drp00030  Pentose phosphate pathway
drp00053  Ascorbate and aldarate metabolism
drp00071  Fatty acid degradation
drp00230  Purine metabolism
drp00250  Alanine, aspartate and glutamate metabolism
drp00260  Glycine, serine and threonine metabolism
drp00620  Pyruvate metabolism
drp00710  Carbon fixation by Calvin cycle
drp00750  Vitamin B6 metabolism
drp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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