KEGG   PATHWAY: dsv03030
Entry
dsv03030                    Pathway                                
Name
DNA replication - Dermacentor silvarum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
dsv03030  DNA replication
dsv03030

Organism
Dermacentor silvarum [GN:dsv]
Gene
119436737  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
119431343  ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
119446216  LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit-like [KO:K07466]
119436407  proliferating cell nuclear antigen [KO:K04802]
119446446  DNA replication ATP-dependent helicase/nuclease DNA2-like [KO:K10742] [EC:5.6.2.3 3.1.-.-]
119466142  flap endonuclease 1-B-like [KO:K04799] [EC:3.1.-.-]
119452831  DNA ligase 1-like isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
119441919  DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
119450303  DNA polymerase alpha subunit B [KO:K02321]
119462111  DNA primase small subunit-like [KO:K02684] [EC:2.7.7.102]
119466330  DNA primase large subunit [KO:K02685]
119433558  DNA primase large subunit isoform X1 [KO:K02685]
119431543  uncharacterized protein LOC119431543 [KO:K02327] [EC:2.7.7.7]
119450738  DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
119453189  DNA polymerase delta subunit 2 [KO:K02328]
119450736  DNA polymerase delta subunit 3-like [KO:K03504]
119455662  DNA polymerase epsilon catalytic subunit A-like [KO:K02324] [EC:2.7.7.7]
119461801  DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
119457554  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
119434096  DNA polymerase epsilon subunit 4-like [KO:K03506] [EC:2.7.7.7]
119466528  DNA replication licensing factor mcm2 [KO:K02540] [EC:5.6.2.3]
119450558  DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
119432598  DNA replication licensing factor mcm4-A-like [KO:K02212] [EC:5.6.2.3]
119457451  DNA replication licensing factor mcm5 [KO:K02209] [EC:5.6.2.3]
119456298  DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
119443112  DNA replication licensing factor mcm7 [KO:K02210] [EC:5.6.2.3]
119442067  replication protein A 32 kDa subunit-A-like [KO:K10739]
119441331  replication protein A 14 kDa subunit [KO:K10740]
119446165  replication factor C subunit 1 [KO:K10754]
119443114  replication factor C subunit 4-like [KO:K10755]
119436753  replication factor C subunit 2 [KO:K10755]
119446721  replication factor C subunit 5-like [KO:K10756]
119449820  replication factor C subunit 3 [KO:K10756]
119459455  ribonuclease H2 subunit A-like [KO:K10743] [EC:3.1.26.4]
119441648  ribonuclease H2 subunit B [KO:K10744]
119452282  uncharacterized protein LOC119452282 [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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