KEGG   PATHWAY: dtn00020
Entry
dtn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Defluviitoga tunisiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dtn00020  Citrate cycle (TCA cycle)
dtn00020

Module
dtn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dtn00020]
Other DBs
GO: 0006099
Organism
Defluviitoga tunisiensis [GN:dtn]
Gene
DTL3_1456  l(1)G0156; putative isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
DTL3_0584  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
DTL3_1569  vorB; Ketoisovalerate oxidoreductase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DTL3_1174  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DTL3_1243  korA; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DTL3_1568  vorA; Ketoisovalerate oxidoreductase subunit VorA [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DTL3_0268  korB; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DTL3_1175  pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DTL3_1567  pyruvate/ketoisovalerate oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DTL3_0269  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
DTL3_1570  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DTL3_1242  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DTL3_0327  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit [KO:K01677] [EC:4.2.1.2]
DTL3_0326  tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta [KO:K01678] [EC:4.2.1.2]
DTL3_0628  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
DTL3_0627  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
DTL3_0630  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
DTL3_0629  pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dtn00010  Glycolysis / Gluconeogenesis
dtn00053  Ascorbate and aldarate metabolism
dtn00061  Fatty acid biosynthesis
dtn00190  Oxidative phosphorylation
dtn00220  Arginine biosynthesis
dtn00250  Alanine, aspartate and glutamate metabolism
dtn00280  Valine, leucine and isoleucine degradation
dtn00350  Tyrosine metabolism
dtn00470  D-Amino acid metabolism
dtn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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