KEGG   PATHWAY: dto00630
Entry
dto00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Desulfobacula toluolica
Class
Metabolism; Carbohydrate metabolism
Pathway map
dto00630  Glyoxylate and dicarboxylate metabolism
dto00630

Module
dto_M00621  Glycine cleavage system [PATH:dto00630]
Other DBs
GO: 0046487 0043648
Organism
Desulfobacula toluolica [GN:dto]
Gene
TOL2_C05220  acsA; AcsA: acetyl-coenzyme A synthetase (acetate--CoA ligase) [KO:K01895] [EC:6.2.1.1]
TOL2_C31520  acsA4; AcsA4: acetyl-coenzyme A synthetase (acetate--CoA ligase) [KO:K01895] [EC:6.2.1.1]
TOL2_C28250  mdh; Mdh: malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TOL2_C28260  mdh2; Mdh2: malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TOL2_C17330  gltA; GltA: citrate synthase [KO:K01647] [EC:2.3.3.1]
TOL2_C38950  gltA2; GltA2: citrate synthase, type II [KO:K01647] [EC:2.3.3.1]
TOL2_C25090  acnA; AcnA: aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
TOL2_C06770  atoB; AtoB: acetyl-CoA acetyltransferase (acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
TOL2_C11420  thiolase [KO:K00626] [EC:2.3.1.9]
TOL2_C35070  thlA; ThlA: acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
TOL2_C36940  MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]
TOL2_C04730  predicted methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
TOL2_C41550  predicted methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
TOL2_C32210  predicted methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
TOL2_C04740  sbm; Sbm: methylmalonyl-CoA mutase-like [KO:K01847] [EC:5.4.99.2]
TOL2_C11340  glcD; GlcD: (S)-2-hydroxy-acid oxidase (glycolate oxidase), delta subunit [KO:K00104] [EC:1.1.99.14]
TOL2_C22880  glcD; GlcD: glycolate oxidase, subunit [KO:K00104] [EC:1.1.99.14]
TOL2_C37580  predicted iron-sulfur cluster-binding oxidoreductase [KO:K11473] [EC:1.1.99.14]
TOL2_C02280  katA; KatA: catalase [KO:K03781] [EC:1.11.1.6]
TOL2_C15750  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
TOL2_C42790  glnA2; GlnA2: glutamine synthetase [KO:K01915] [EC:6.3.1.2]
TOL2_C15720  glnA; GlnA: glutamine synthetase [KO:K01915] [EC:6.3.1.2]
TOL2_C33730  glyA; GlyA: serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
TOL2_C20960  gcvPA; GcvPA: glycine dehydrogenase (decarboxylating), glycine cleavage system P protein, subunit 1 [KO:K00282] [EC:1.4.4.2]
TOL2_C20970  gcvPB; GcvPB: glycine dehydrogenase (decarboxylating), glycine cleavage system P protein, subunit 2 [KO:K00283] [EC:1.4.4.2]
TOL2_C39830  fusion protein: glycine cleavage T-protein and glycine hydroxymethyltransferase [KO:K00605] [EC:2.1.2.10]
TOL2_C21000  lpdA; LpdA: dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) [KO:K00382] [EC:1.8.1.4]
TOL2_C20950  gcvH; GcvH: glycine cleavage system, H protein [KO:K02437]
TOL2_C11990  morA; MorA: molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
TOL2_C29270  fdhA3; FdhA3: formate dehydrogenase, subunit A [KO:K00123] [EC:1.17.1.9]
TOL2_C29290  fdhB; FdhB: formate dehydrose, subunit B [KO:K00124]
TOL2_C17690  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00124]
TOL2_C36830  hmcB; HmcB: HMC redox complex, transmembrane protein [KO:K00124]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dto00010  Glycolysis / Gluconeogenesis
dto00020  Citrate cycle (TCA cycle)
dto00030  Pentose phosphate pathway
dto00053  Ascorbate and aldarate metabolism
dto00071  Fatty acid degradation
dto00230  Purine metabolism
dto00250  Alanine, aspartate and glutamate metabolism
dto00260  Glycine, serine and threonine metabolism
dto00620  Pyruvate metabolism
dto00710  Carbon fixation by Calvin cycle
dto00750  Vitamin B6 metabolism
dto00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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