KEGG   PATHWAY: dts00630
Entry
dts00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Delftia tsuruhatensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
dts00630  Glyoxylate and dicarboxylate metabolism
dts00630

Module
dts_M00012  Glyoxylate cycle [PATH:dts00630]
dts_M00621  Glycine cleavage system [PATH:dts00630]
Other DBs
GO: 0046487 0043648
Organism
Delftia tsuruhatensis [GN:dts]
Gene
BI380_00630  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BI380_09925  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
BI380_21405  malate synthase G [KO:K01638] [EC:2.3.3.9]
BI380_12120  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BI380_31125  excisionase [KO:K01647] [EC:2.3.3.1]
BI380_12155  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BI380_20710  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BI380_12075  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BI380_12100  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BI380_04250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_17725  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_22715  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_31620  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_00710  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_25000  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_30465  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_02265  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_21885  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BI380_04255  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
BI380_04920  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
BI380_04915  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BI380_26420  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
BI380_04905  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BI380_19175  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
BI380_23410  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
BI380_23420  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BI380_07540  catalase HPII [KO:K03781] [EC:1.11.1.6]
BI380_23225  catalase HPII [KO:K03781] [EC:1.11.1.6]
BI380_07105  catalase [KO:K03781] [EC:1.11.1.6]
BI380_17660  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BI380_26880  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BI380_25095  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BI380_32295  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BI380_21015  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BI380_28865  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BI380_08060  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BI380_30255  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
BI380_04685  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BI380_04710  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BI380_30870  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BI380_07465  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
BI380_07455  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
BI380_05885  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BI380_06100  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BI380_03460  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BI380_07460  glycine cleavage system protein H [KO:K02437]
BI380_13925  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
BI380_13920  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BI380_13915  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BI380_13935  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
BI380_23350  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
BI380_13945  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BI380_12430  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BI380_04955  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BI380_15340  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
BI380_03435  formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
BI380_03440  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
BI380_15345  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BI380_03430  formate dehydrogenase subunit beta [KO:K00124]
BI380_15350  formate dehydrogenase subunit gamma [KO:K00124]
BI380_03425  formate dehydrogenase subunit gamma [KO:K00127]
BI380_01200  esterase [KO:K01432] [EC:3.5.1.9]
BI380_13410  arylformamidase [KO:K07130] [EC:3.5.1.9]
BI380_19165  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BI380_22640  formamidase [KO:K01455] [EC:3.5.1.49]
BI380_22870  formamidase [KO:K01455] [EC:3.5.1.49]
BI380_22525  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dts00010  Glycolysis / Gluconeogenesis
dts00020  Citrate cycle (TCA cycle)
dts00030  Pentose phosphate pathway
dts00053  Ascorbate and aldarate metabolism
dts00071  Fatty acid degradation
dts00230  Purine metabolism
dts00250  Alanine, aspartate and glutamate metabolism
dts00260  Glycine, serine and threonine metabolism
dts00620  Pyruvate metabolism
dts00710  Carbon fixation by Calvin cycle
dts00750  Vitamin B6 metabolism
dts00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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