KEGG   PATHWAY: dug00630
Entry
dug00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Duganella dendranthematis
Class
Metabolism; Carbohydrate metabolism
Pathway map
dug00630  Glyoxylate and dicarboxylate metabolism
dug00630

Module
dug_M00012  Glyoxylate cycle [PATH:dug00630]
dug_M00621  Glycine cleavage system [PATH:dug00630]
Other DBs
GO: 0046487 0043648
Organism
Duganella dendranthematis [GN:dug]
Gene
HH213_05720  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HH213_18085  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HH213_24720  malate synthase A [KO:K01638] [EC:2.3.3.9]
HH213_02585  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HH213_21830  citrate synthase [KO:K01647] [EC:2.3.3.1]
HH213_02550  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HH213_02600  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HH213_26720  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HH213_24690  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HH213_25390  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HH213_10480  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HH213_11850  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HH213_11855  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HH213_15910  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
HH213_15915  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
HH213_15920  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
HH213_25000  catalase [KO:K03781] [EC:1.11.1.6]
HH213_26890  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
HH213_27290  catalase [KO:K03781] [EC:1.11.1.6]
HH213_29495  catalase [KO:K03781] [EC:1.11.1.6]
HH213_02650  catalase [KO:K03781] [EC:1.11.1.6]
HH213_05450  catalase [KO:K03781] [EC:1.11.1.6]
HH213_09850  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
HH213_10635  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
HH213_23105  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
HH213_04430  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
HH213_10035  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
HH213_14650  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
HH213_07960  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
HH213_07990  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
HH213_20325  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HH213_27575  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
HH213_27565  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
HH213_02490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH213_04965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH213_10245  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HH213_27570  gcvH; glycine cleavage system protein GcvH [KO:K02437]
HH213_20840  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
HH213_09240  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
HH213_26415  glycerate kinase [KO:K00865] [EC:2.7.1.165]
HH213_17365  glycerate kinase [KO:K11529] [EC:2.7.1.165]
HH213_17375  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HH213_26465  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HH213_03935  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HH213_14365  cupin domain-containing protein [KO:K01569] [EC:4.1.1.2]
HH213_01720  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
HH213_01725  fdxH; formate dehydrogenase subunit beta [KO:K00124]
HH213_01730  formate dehydrogenase subunit gamma [KO:K00127]
HH213_03070  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
HH213_21005  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
HH213_07320  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dug00010  Glycolysis / Gluconeogenesis
dug00020  Citrate cycle (TCA cycle)
dug00030  Pentose phosphate pathway
dug00053  Ascorbate and aldarate metabolism
dug00071  Fatty acid degradation
dug00230  Purine metabolism
dug00250  Alanine, aspartate and glutamate metabolism
dug00260  Glycine, serine and threonine metabolism
dug00620  Pyruvate metabolism
dug00710  Carbon fixation by Calvin cycle
dug00750  Vitamin B6 metabolism
dug00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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