KEGG   PATHWAY: dzi00630
Entry
dzi00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Durio zibethinus (durian)
Class
Metabolism; Carbohydrate metabolism
Pathway map
dzi00630  Glyoxylate and dicarboxylate metabolism
dzi00630

Module
dzi_M00012  Glyoxylate cycle [PATH:dzi00630]
dzi_M00532  Photorespiration [PATH:dzi00630]
dzi_M00621  Glycine cleavage system [PATH:dzi00630]
Other DBs
GO: 0046487 0043648
Organism
Durio zibethinus (durian) [GN:dzi]
Gene
111317563  LOW QUALITY PROTEIN: isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
111295061  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
111310067  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
111306910  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
111279596  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
111290419  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
111305891  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
111306718  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
111279212  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
111292056  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
111289539  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
111312527  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111283663  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111274989  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
111301719  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111308638  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
111293205  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
111286249  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111291865  citrate synthase 2, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
111318192  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
111289097  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
111317268  aconitate hydratase 1-like isoform X1 [KO:K01681] [EC:4.2.1.3]
111281778  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
111275671  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
111291741  aconitate hydratase 1 isoform X1 [KO:K01681] [EC:4.2.1.3]
111287281  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
111305536  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
111275290  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
111274844  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
111287388  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
111281106  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
111276008  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
111280735  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
111274724  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
111300219  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
111312910  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
111292821  catalase isozyme 2 isoform X1 [KO:K03781] [EC:1.11.1.6]
111315242  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
111290024  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
111304648  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
111305921  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
111305922  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
111281325  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
111314477  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
111305509  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
111317662  LOW QUALITY PROTEIN: glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
111308221  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
111281168  phosphoglycolate phosphatase 2 isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
111276801  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
36165473  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
111313636  ribulose bisphosphate carboxylase small chain 3B, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
111285198  ribulose bisphosphate carboxylase small chain clone 512-like isoform X1 [KO:K01602] [EC:4.1.1.39]
111302022  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111303935  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111317434  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
111287321  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
111311455  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
111293883  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
111307303  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
111313621  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
111282023  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
111306335  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
111317103  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
111294234  glutamine synthetase nodule isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
111309228  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
111314917  serine hydroxymethyltransferase, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
111299283  serine hydroxymethyltransferase 3, chloroplastic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
111312483  serine hydroxymethyltransferase 2, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
111315601  serine hydroxymethyltransferase 6-like [KO:K00600] [EC:2.1.2.1]
111316157  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
111307834  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
111312345  serine hydroxymethyltransferase 7 isoform X1 [KO:K00600] [EC:2.1.2.1]
111287915  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
111300697  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
111308882  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
111286330  serine hydroxymethyltransferase 3, chloroplastic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
111282320  serine hydroxymethyltransferase 7-like isoform X1 [KO:K00600] [EC:2.1.2.1]
111299271  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
111302982  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
111284907  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
111281312  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
111280178  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
111306914  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
111306958  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
111280077  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111298226  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
111286405  glycine cleavage system H protein, mitochondrial [KO:K02437]
111315080  glycine cleavage system H protein, mitochondrial-like isoform X1 [KO:K02437]
111308539  glycine cleavage system H protein 2, mitochondrial-like isoform X1 [KO:K02437]
111282366  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
111291176  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
111318559  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
111280714  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
111291963  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
111305366  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
111290580  formyltetrahydrofolate deformylase 2, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
111299941  uncharacterized protein LOC111299941 isoform X1 [KO:K01455] [EC:3.5.1.49]
111317064  uncharacterized protein LOC111317064 isoform X1 [KO:K01455] [EC:3.5.1.49]
111290535  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
111277965  LOW QUALITY PROTEIN: oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
dzi00010  Glycolysis / Gluconeogenesis
dzi00020  Citrate cycle (TCA cycle)
dzi00030  Pentose phosphate pathway
dzi00053  Ascorbate and aldarate metabolism
dzi00071  Fatty acid degradation
dzi00230  Purine metabolism
dzi00250  Alanine, aspartate and glutamate metabolism
dzi00260  Glycine, serine and threonine metabolism
dzi00620  Pyruvate metabolism
dzi00710  Carbon fixation by Calvin cycle
dzi00750  Vitamin B6 metabolism
dzi00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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