KEGG   PATHWAY: egu00630
Entry
egu00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Elaeis guineensis (African oil palm)
Class
Metabolism; Carbohydrate metabolism
Pathway map
egu00630  Glyoxylate and dicarboxylate metabolism
egu00630

Module
egu_M00012  Glyoxylate cycle [PATH:egu00630]
egu_M00532  Photorespiration [PATH:egu00630]
egu_M00621  Glycine cleavage system [PATH:egu00630]
Other DBs
GO: 0046487 0043648
Organism
Elaeis guineensis (African oil palm) [GN:egu]
Gene
105051958  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
105050999  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
105060336  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
105057401  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105045056  acetate/butyrate--CoA ligase AAE7, peroxisomal-like isoform X1 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105051373  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
105044322  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105055679  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105043662  malate dehydrogenase isoform X2 [KO:K00025] [EC:1.1.1.37]
105038457  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105040661  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105041737  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105060089  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105058543  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
105061005  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105055912  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
105056603  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105039446  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
105040575  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105041280  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
105048090  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
105050474  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105042560  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105061192  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
105051238  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105060540  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105056313  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105033990  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
105036923  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
105059510  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
105058595  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
105054906  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
105033846  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
105042655  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
105059701  catalase isozyme B [KO:K03781] [EC:1.11.1.6]
105054286  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105054285  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105047663  glyoxylate/succinic semialdehyde reductase 2, chloroplastic isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105051539  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105037121  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105044036  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
105053770  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
105051428  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
105050643  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
12079473  rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
105039639  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
105041203  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
105048437  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
105035354  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
105057640  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
105049882  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
105050532  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
105049124  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
105057601  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
105035493  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105041104  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
105055426  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
105057795  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
105053181  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105048492  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
105058949  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
105034921  LOW QUALITY PROTEIN: serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
105038419  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
105036886  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
105038874  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
105042733  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
105051832  serine hydroxymethyltransferase 7 isoform X1 [KO:K00600] [EC:2.1.2.1]
105047677  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
105060641  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
105035926  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
105039925  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
105040020  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
105059764  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
105055010  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
105059577  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
105049207  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
105059867  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
105039298  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
105056297  LOW QUALITY PROTEIN: formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
105059453  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
105043666  formyltetrahydrofolate deformylase 1, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
105034073  uncharacterized protein LOC105034073 isoform X1 [KO:K01455] [EC:3.5.1.49]
105058674  uncharacterized protein LOC105058674 isoform X1 [KO:K01455] [EC:3.5.1.49]
105058713  uncharacterized protein LOC105058713 [KO:K01455] [EC:3.5.1.49]
105054837  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
egu00010  Glycolysis / Gluconeogenesis
egu00020  Citrate cycle (TCA cycle)
egu00030  Pentose phosphate pathway
egu00053  Ascorbate and aldarate metabolism
egu00071  Fatty acid degradation
egu00230  Purine metabolism
egu00250  Alanine, aspartate and glutamate metabolism
egu00260  Glycine, serine and threonine metabolism
egu00620  Pyruvate metabolism
egu00710  Carbon fixation in photosynthetic organisms
egu00750  Vitamin B6 metabolism
egu00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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