KEGG   PATHWAY: ele00020
Entry
ele00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Eggerthella lenta
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ele00020  Citrate cycle (TCA cycle)
ele00020

Module
ele_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ele00020]
ele_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ele00020]
Other DBs
GO: 0006099
Organism
Eggerthella lenta [GN:ele]
Gene
Elen_0085  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Elen_2333  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Elen_1459  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Elen_2334  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Elen_1705  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Elen_1704  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Elen_1703  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Elen_1706  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Elen_1143  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Elen_1144  Fe-S type hydro-lyase tartrate/fumarate beta region [KO:K01678] [EC:4.2.1.2]
Elen_1140  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Elen_0417  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Elen_0418  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Elen_0416  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Elen_2143  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ele00010  Glycolysis / Gluconeogenesis
ele00061  Fatty acid biosynthesis
ele00071  Fatty acid degradation
ele00190  Oxidative phosphorylation
ele00220  Arginine biosynthesis
ele00250  Alanine, aspartate and glutamate metabolism
ele00280  Valine, leucine and isoleucine degradation
ele00350  Tyrosine metabolism
ele00470  D-Amino acid metabolism
ele00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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