KEGG   PATHWAY: emx00630
Entry
emx00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Sinorhizobium mexicanum
Class
Metabolism; Carbohydrate metabolism
Pathway map
emx00630  Glyoxylate and dicarboxylate metabolism
emx00630

Module
emx_M00012  Glyoxylate cycle [PATH:emx00630]
emx_M00621  Glycine cleavage system [PATH:emx00630]
emx_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:emx00630]
Other DBs
GO: 0046487 0043648
Organism
Sinorhizobium mexicanum [GN:emx]
Gene
FKV68_03915  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
FKV68_20460  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FKV68_16970  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
FKV68_00320  malate synthase G [KO:K01638] [EC:2.3.3.9]
FKV68_19275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FKV68_08090  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FKV68_13390  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
FKV68_19965  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FKV68_18490  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FKV68_20140  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FKV68_22215  thiolase family protein [KO:K00626] [EC:2.3.1.9]
FKV68_30895  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FKV68_03105  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FKV68_04790  thiolase family protein [KO:K00626] [EC:2.3.1.9]
FKV68_20135  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
FKV68_06890  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
FKV68_30905  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
FKV68_26545  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
FKV68_26555  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
FKV68_26540  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
FKV68_04235  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FKV68_04240  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
FKV68_04250  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
FKV68_29420  catalase [KO:K03781] [EC:1.11.1.6]
FKV68_08920  catalase [KO:K03781] [EC:1.11.1.6]
FKV68_01100  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
FKV68_01010  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FKV68_04405  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FKV68_07455  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
FKV68_10675  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FKV68_33075  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
FKV68_33080  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
FKV68_27640  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FKV68_03890  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FKV68_09525  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
FKV68_14480  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FKV68_16325  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FKV68_06490  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FKV68_10070  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FKV68_10060  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FKV68_18485  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKV68_19225  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKV68_07805  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FKV68_10065  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FKV68_31305  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
FKV68_31300  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
FKV68_29140  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FKV68_31295  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
FKV68_20290  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FKV68_31290  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FKV68_21250  aldehyde dehydrogenase family protein [KO:K07248] [EC:1.2.1.22 1.2.1.21]
FKV68_08775  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FKV68_18220  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FKV68_19010  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
FKV68_19020  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FKV68_24995  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
FKV68_19030  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
FKV68_25000  fdxH; formate dehydrogenase subunit beta [KO:K00124]
FKV68_19035  formate dehydrogenase subunit gamma [KO:K00127]
FKV68_25005  formate dehydrogenase subunit gamma [KO:K00127]
FKV68_27140  alpha/beta fold hydrolase [KO:K01432] [EC:3.5.1.9]
FKV68_32090  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FKV68_18495  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FKV68_27935  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FKV68_31030  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FKV68_27985  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
emx00010  Glycolysis / Gluconeogenesis
emx00020  Citrate cycle (TCA cycle)
emx00030  Pentose phosphate pathway
emx00053  Ascorbate and aldarate metabolism
emx00071  Fatty acid degradation
emx00230  Purine metabolism
emx00250  Alanine, aspartate and glutamate metabolism
emx00260  Glycine, serine and threonine metabolism
emx00620  Pyruvate metabolism
emx00710  Carbon fixation by Calvin cycle
emx00750  Vitamin B6 metabolism
emx00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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