KEGG   PATHWAY: fme04145
Entry
fme04145                    Pathway                                
Name
Phagosome - Fomitiporia mediterranea
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
Pathway map
fme04145  Phagosome
fme04145

Other DBs
GO: 0045335
Organism
Fomitiporia mediterranea [GN:fme]
Gene
FOMMEDRAFT_126341  hypothetical protein [KO:K08492]
FOMMEDRAFT_21347  protein transport protein Sec22 [KO:K08517]
FOMMEDRAFT_121735  GTP-binding protein ypt5 [KO:K07889]
FOMMEDRAFT_143148  ras-domain-containing protein [KO:K07889]
FOMMEDRAFT_138537  phosphatidylinositol 3-kinase [KO:K00914] [EC:2.7.1.137]
FOMMEDRAFT_107311  ubiquitin binding protein [KO:K12182]
FOMMEDRAFT_20860  V-type ATPase [KO:K02145] [EC:7.1.2.2]
FOMMEDRAFT_76558  V-type ATPase [KO:K02147]
FOMMEDRAFT_19620  ATPase, V1 complex, subunit C [KO:K02148]
FOMMEDRAFT_109842  hypothetical protein [KO:K02149]
FOMMEDRAFT_101342  vacuolar H+ ATPase E1 [KO:K02150]
FOMMEDRAFT_167550  vacuolar ATP synthase [KO:K02151]
FOMMEDRAFT_130762  V-type ATPase [KO:K02152]
FOMMEDRAFT_17400  hypothetical protein [KO:K02153]
FOMMEDRAFT_114647  ATPase, V0 complex, subunit D [KO:K02146]
FOMMEDRAFT_109284  ATPase, V1 complex, subunit H [KO:K02144]
FOMMEDRAFT_114271  V-type ATPase [KO:K02155]
FOMMEDRAFT_20071  vacuolar ATP synthase proteolipid subunit [KO:K03661]
FOMMEDRAFT_19344  hypothetical protein [KO:K07897]
FOMMEDRAFT_115872  cytoplasmic dynein intermediate chain [KO:K10415]
FOMMEDRAFT_126556  hypothetical protein [KO:K10416]
FOMMEDRAFT_141839  tubulin alpha [KO:K07374]
FOMMEDRAFT_102200  tubulin nucleotide-binding domain-like protein [KO:K07375]
FOMMEDRAFT_22230  beta-tubulin 1 tubb1 [KO:K07375]
FOMMEDRAFT_135982  beta-tubulin [KO:K07375]
FOMMEDRAFT_105874  hypothetical protein [KO:K00921] [EC:2.7.1.150]
FOMMEDRAFT_124084  SecY protein [KO:K10956]
FOMMEDRAFT_116220  Pre protein translocase Sec Sec61-beta subunit [KO:K09481]
FOMMEDRAFT_113874  secE/sec61-gamma protein [KO:K07342]
FOMMEDRAFT_96000  Calreticulin-domain-containing protein [KO:K08054]
FOMMEDRAFT_111964  NADPH oxidase isoform 2 [KO:K21421] [EC:1.-.-.-]
Compound
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Stuart LM, Ezekowitz RA
  Title
Phagocytosis: elegant complexity.
  Journal
Immunity 22:539-50 (2005)
DOI:10.1016/j.immuni.2005.05.002
Reference
  Authors
Tjelle TE, Lovdal T, Berg T
  Title
Phagosome dynamics and function.
  Journal
Reference
  Authors
Dupuy AG, Caron E
  Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
  Journal
J Cell Sci 121:1773-83 (2008)
DOI:10.1242/jcs.018036
Reference
  Authors
Brumell JH, Grinstein S
  Title
Salmonella redirects phagosomal maturation.
  Journal
Curr Opin Microbiol 7:78-84 (2004)
DOI:10.1016/j.mib.2003.12.005
Reference
  Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
  Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
  Journal
EMBO J 26:313-24 (2007)
DOI:10.1038/sj.emboj.7601511
Reference
  Authors
Luzio JP, Pryor PR, Bright NA
  Title
Lysosomes: fusion and function.
  Journal
Nat Rev Mol Cell Biol 8:622-32 (2007)
DOI:10.1038/nrm2217
Reference
  Authors
Sumimoto H
  Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
  Journal
FEBS J 275:3249-77 (2008)
DOI:10.1111/j.1742-4658.2008.06488.x
Related
pathway
fme04144  Endocytosis
KO pathway
ko04145   
LinkDB

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