KEGG   PATHWAY: gab00920
Entry
gab00920                    Pathway                                
Name
Sulfur metabolism - Gossypium arboreum (tree cotton)
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
gab00920  Sulfur metabolism
gab00920

Module
gab_M00021  Cysteine biosynthesis, serine => cysteine [PATH:gab00920]
gab_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:gab00920]
Other DBs
GO: 0006790
Organism
Gossypium arboreum (tree cotton) [GN:gab]
Gene
108474573  ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108489957  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108486607  ATP sulfurylase 2-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108468127  bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4 isoform X1 [KO:K22966] [EC:2.7.7.5 3.6.2.1]
108473217  adenylyl-sulfate kinase 1, chloroplastic-like [KO:K00860] [EC:2.7.1.25]
108470928  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
108477102  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
108467835  adenylyl-sulfate kinase 3-like [KO:K00860] [EC:2.7.1.25]
108461303  adenylyl-sulfate kinase 3-like [KO:K00860] [EC:2.7.1.25]
108480737  PAP-specific phosphatase HAL2-like [KO:K01082] [EC:3.1.3.7]
108485973  PAP-specific phosphatase HAL2-like [KO:K01082] [EC:3.1.3.7]
108489421  PAP-specific phosphatase HAL2-like [KO:K01082] [EC:3.1.3.7]
108452018  putative PAP-specific phosphatase, mitochondrial [KO:K01082] [EC:3.1.3.7]
108489423  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
108454499  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
108454552  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
108466233  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
108486674  5'-adenylylsulfate reductase 3, chloroplastic [KO:K05907] [EC:1.8.4.9]
108452964  5'-adenylylsulfate reductase 2, chloroplastic [KO:K05907] [EC:1.8.4.9]
108454080  sulfite oxidase [KO:K00387] [EC:1.8.3.1]
108452418  sulfite oxidase-like isoform X1 [KO:K00387] [EC:1.8.3.1]
108453588  sulfite reductase [ferredoxin], chloroplastic-like [KO:K00392] [EC:1.8.7.1]
108450396  sulfite reductase [ferredoxin], chloroplastic-like [KO:K00392] [EC:1.8.7.1]
108480258  persulfide dioxygenase ETHE1 homolog, mitochondrial isoform X1 [KO:K17725] [EC:1.13.11.18]
108464183  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
108483295  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
108483085  serine acetyltransferase 2-like isoform X1 [KO:K00640] [EC:2.3.1.30]
108461842  serine acetyltransferase 1, chloroplastic-like [KO:K00640] [EC:2.3.1.30]
108463761  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
108489559  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
108470187  cysteine synthase [KO:K01738] [EC:2.5.1.47]
108461273  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
108453999  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
108456754  cysteine synthase, chloroplastic/chromoplastic-like [KO:K01738] [EC:2.5.1.47]
108463981  bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like isoform X1 [KO:K01738] [EC:2.5.1.47]
108464016  bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like [KO:K01738] [EC:2.5.1.47]
108473707  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
108473708  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial-like isoform X1 [KO:K13034] [EC:2.5.1.47 4.4.1.9]
108487576  cystathionine gamma-synthase 1, chloroplastic-like [KO:K01739] [EC:2.5.1.48]
108460914  cystathionine gamma-synthase 1, chloroplastic-like [KO:K01739] [EC:2.5.1.48]
108475362  selenium-binding protein 2-like [KO:K17285] [EC:1.8.3.4]
108475363  selenium-binding protein 2-like [KO:K17285] [EC:1.8.3.4]
108476370  selenium-binding protein 1-like [KO:K17285] [EC:1.8.3.4]
108487010  selenium-binding protein 1-like [KO:K17285] [EC:1.8.3.4]
108474869  selenium-binding protein 2-like [KO:K17285] [EC:1.8.3.4]
108475721  selenium-binding protein 2-like [KO:K17285] [EC:1.8.3.4]
108465787  selenium-binding protein 2-like [KO:K17285] [EC:1.8.3.4]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
gab00260  Glycine, serine and threonine metabolism
gab00270  Cysteine and methionine metabolism
KO pathway
ko00920   
LinkDB

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