KEGG   PATHWAY: gac00020
Entry
gac00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geoglobus acetivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gac00020  Citrate cycle (TCA cycle)
gac00020

Module
gac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gac00020]
gac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gac00020]
Other DBs
GO: 0006099
Organism
Geoglobus acetivorans [GN:gac]
Gene
GACE_0124  citrate synthase [KO:K01647] [EC:2.3.3.1]
GACE_0933  isocitrate dehydrogenase (NADP-dependent) [KO:K00031] [EC:1.1.1.42]
GACE_0687  2-oxoacid ferredoxin oxidoreductase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GACE_0686  2-oxoacid ferredoxin oxidoreductase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GACE_1895  ferredoxin [KO:K00176] [EC:1.2.7.3]
GACE_2121  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
GACE_2119  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
GACE_2122  succinate dehydrogenase, subunit A [KO:K00239] [EC:1.3.5.1]
GACE_2123  succinate dehydrogenase, subunit B [KO:K00240] [EC:1.3.5.1]
GACE_2124  succinate dehydrogenase, subunit C [KO:K00241]
GACE_2125  succinate dehydrogenase, subunit D [KO:K00242]
GACE_1870  Fumarate hydratase, subunit alpha [KO:K01677] [EC:4.2.1.2]
GACE_1871  Fumarate hydratase, subunit beta [KO:K01678] [EC:4.2.1.2]
GACE_0262  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GACE_0561  Biotin carboxylase of acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
GACE_1545  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
GACE_1416  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
GACE_0696  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
GACE_1417  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
GACE_0695  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
GACE_2155  2-ketoisovalerate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
GACE_1414  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
GACE_0698  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
GACE_2153  2-ketoisovalerate ferredoxin oxidoreductase, fused subunits gamma and delta [KO:K00172] [EC:1.2.7.1]
GACE_0697  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
GACE_1415  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gac00010  Glycolysis / Gluconeogenesis
gac00061  Fatty acid biosynthesis
gac00071  Fatty acid degradation
gac00190  Oxidative phosphorylation
gac00220  Arginine biosynthesis
gac00250  Alanine, aspartate and glutamate metabolism
gac00280  Valine, leucine and isoleucine degradation
gac00350  Tyrosine metabolism
gac00470  D-Amino acid metabolism
gac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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