KEGG   PATHWAY: glc00630
Entry
glc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Glaciimonas sp. PAMC28666
Class
Metabolism; Carbohydrate metabolism
Pathway map
glc00630  Glyoxylate and dicarboxylate metabolism
glc00630

Module
glc_M00012  Glyoxylate cycle [PATH:glc00630]
glc_M00621  Glycine cleavage system [PATH:glc00630]
Other DBs
GO: 0046487 0043648
Organism
Glaciimonas sp. PAMC28666 [GN:glc]
Gene
JQN73_09745  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
JQN73_02930  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
JQN73_15290  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
JQN73_20160  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
JQN73_00280  malate synthase A [KO:K01638] [EC:2.3.3.9]
JQN73_19935  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JQN73_19970  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JQN73_19920  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JQN73_03230  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
JQN73_09045  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
JQN73_12590  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
JQN73_12760  hypothetical protein [KO:K00626] [EC:2.3.1.9]
JQN73_12765  thiolase family protein [KO:K00626] [EC:2.3.1.9]
JQN73_16800  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JQN73_21765  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
JQN73_04330  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
JQN73_00435  3-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
JQN73_12020  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
JQN73_12025  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
JQN73_12030  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
JQN73_03660  catalase [KO:K03781] [EC:1.11.1.6]
JQN73_17655  catalase [KO:K03781] [EC:1.11.1.6]
JQN73_18575  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
JQN73_09110  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
JQN73_08210  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
JQN73_17185  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
JQN73_03530  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
JQN73_11815  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
JQN73_20650  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
JQN73_06310  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
JQN73_14420  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JQN73_15165  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
JQN73_21610  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
JQN73_21600  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
JQN73_13630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQN73_19985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQN73_18100  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JQN73_21615  gcvH; glycine cleavage system protein GcvH [KO:K02437]
JQN73_14065  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
JQN73_14070  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
JQN73_01205  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
JQN73_14075  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
JQN73_21985  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
JQN73_14080  glycerate kinase [KO:K11529] [EC:2.7.1.165]
JQN73_09575  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
JQN73_16955  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
JQN73_02825  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
JQN73_13050  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
JQN73_13040  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
JQN73_21430  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
JQN73_13035  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
JQN73_21425  fdxH; formate dehydrogenase subunit beta [KO:K00124]
JQN73_13030  formate dehydrogenase subunit gamma [KO:K00127]
JQN73_21420  formate dehydrogenase subunit gamma [KO:K00127]
JQN73_03755  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JQN73_15245  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
JQN73_16305  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
JQN73_16325  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
glc00010  Glycolysis / Gluconeogenesis
glc00020  Citrate cycle (TCA cycle)
glc00030  Pentose phosphate pathway
glc00053  Ascorbate and aldarate metabolism
glc00071  Fatty acid degradation
glc00230  Purine metabolism
glc00250  Alanine, aspartate and glutamate metabolism
glc00260  Glycine, serine and threonine metabolism
glc00620  Pyruvate metabolism
glc00710  Carbon fixation by Calvin cycle
glc00750  Vitamin B6 metabolism
glc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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