KEGG   PATHWAY: glp00020
Entry
glp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gloeocapsa sp. PCC 7428
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
glp00020  Citrate cycle (TCA cycle)
glp00020

Module
glp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:glp00020]
glp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:glp00020]
Other DBs
GO: 0006099
Organism
Gloeocapsa sp. PCC 7428 [GN:glp]
Gene
Glo7428_1192  citrate synthase [KO:K01647] [EC:2.3.3.1]
Glo7428_0079  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Glo7428_3583  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Glo7428_3189  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Glo7428_2637  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Glo7428_2636  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Glo7428_2328  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Glo7428_1865  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Glo7428_1370  succinate dehydrogenase subunit C [KO:K00241]
Glo7428_0432  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Glo7428_1627  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Glo7428_2329  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Glo7428_3260  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
glp00010  Glycolysis / Gluconeogenesis
glp00053  Ascorbate and aldarate metabolism
glp00061  Fatty acid biosynthesis
glp00071  Fatty acid degradation
glp00190  Oxidative phosphorylation
glp00220  Arginine biosynthesis
glp00250  Alanine, aspartate and glutamate metabolism
glp00280  Valine, leucine and isoleucine degradation
glp00350  Tyrosine metabolism
glp00470  D-Amino acid metabolism
glp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system