KEGG   PATHWAY: gra00630
Entry
gra00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gossypium raimondii
Class
Metabolism; Carbohydrate metabolism
Pathway map
gra00630  Glyoxylate and dicarboxylate metabolism
gra00630

Module
gra_M00012  Glyoxylate cycle [PATH:gra00630]
gra_M00532  Photorespiration [PATH:gra00630]
gra_M00621  Glycine cleavage system [PATH:gra00630]
Other DBs
GO: 0046487 0043648
Organism
Gossypium raimondii [GN:gra]
Gene
105794296  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
105782985  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
105780292  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
105772620  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [KO:K01895] [EC:6.2.1.1]
105777138  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105796889  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105796890  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105798883  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
105786467  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
105796729  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105777427  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
105800362  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
105762413  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105778421  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105787934  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105786046  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
105788417  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105787721  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
105766386  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105802055  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
105769090  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
105802361  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
105794286  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
105764429  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
105766731  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105771404  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105768436  LOW QUALITY PROTEIN: aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105768448  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
105763209  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
105773847  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105803403  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105775889  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
105775896  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
105776222  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
105776223  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
105772673  peroxisomal (S)-2-hydroxyacid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
105774492  LOW QUALITY PROTEIN: peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
105767964  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
105799015  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
105783611  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
105787401  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
105769880  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
105789175  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105789174  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105789177  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105797500  glyoxylate/hydroxypyruvate reductase HPR3 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105767921  glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR [KO:K15919] [EC:1.1.1.79 1.1.1.81]
128031884  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
105790362  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105776842  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105803374  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
105785924  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
105788315  phosphoglycolate phosphatase 1A, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
105774079  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
128041809  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
11538595  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
128038440  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
128038754  LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
105800954  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
105789073  ribulose bisphosphate carboxylase small subunit, chloroplastic 3 [KO:K01602] [EC:4.1.1.39]
105803580  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
105803582  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
105783672  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
105770045  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
105794627  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
105786202  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
105801163  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
105773888  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
105796579  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
105800327  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
105803633  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
105784297  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105780042  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
105795291  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
105772902  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
105776744  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
105779388  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
105769598  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
105769422  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
105797261  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
105797199  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
105800386  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
105804112  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
105772889  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
105769268  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
105768583  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
105772643  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
105796931  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
105798889  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
105800709  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
105789337  glycine cleavage system H protein, mitochondrial [KO:K02437]
105801990  glycine cleavage system H protein, mitochondrial [KO:K02437]
105763056  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
105777712  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
105770104  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
105768656  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
105789257  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
105792057  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
105804013  uncharacterized protein LOC105804013 isoform X1 [KO:K01455] [EC:3.5.1.49]
105792203  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gra00010  Glycolysis / Gluconeogenesis
gra00020  Citrate cycle (TCA cycle)
gra00030  Pentose phosphate pathway
gra00053  Ascorbate and aldarate metabolism
gra00071  Fatty acid degradation
gra00230  Purine metabolism
gra00250  Alanine, aspartate and glutamate metabolism
gra00260  Glycine, serine and threonine metabolism
gra00620  Pyruvate metabolism
gra00710  Carbon fixation by Calvin cycle
gra00750  Vitamin B6 metabolism
gra00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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