KEGG   PATHWAY: gsj00630
Entry
gsj00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Glycine soja (wild soybean)
Class
Metabolism; Carbohydrate metabolism
Pathway map
gsj00630  Glyoxylate and dicarboxylate metabolism
gsj00630

Module
gsj_M00012  Glyoxylate cycle [PATH:gsj00630]
gsj_M00532  Photorespiration [PATH:gsj00630]
gsj_M00621  Glycine cleavage system [PATH:gsj00630]
Other DBs
GO: 0046487 0043648
Organism
Glycine soja (wild soybean) [GN:gsj]
Gene
114417293  isocitrate lyase 1 [KO:K01637] [EC:4.1.3.1]
114379086  isocitrate lyase 2 [KO:K01637] [EC:4.1.3.1]
114400183  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
114390595  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
114367524  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
114419987  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
114393522  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
114412039  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
114393247  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
114394120  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
114377770  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
114371130  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
114381489  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
114410847  malate dehydrogenase 1, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
114421348  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
114416798  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
114419443  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
114411857  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
114422694  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
114379829  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
114377201  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
114393002  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
114402050  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114422019  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
114396563  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114423370  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114385729  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
114385157  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114419499  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
114417311  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
114378116  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
114380291  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
114372894  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
114373838  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
114403775  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
114420245  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
114385080  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
114392730  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
114421568  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
114421569  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
114421570  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
114422159  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
114412769  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
114412771  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
114388119  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
114414535  catalase-4-like [KO:K03781] [EC:1.11.1.6]
114408510  catalase-4 [KO:K03781] [EC:1.11.1.6]
114384499  catalase-3 [KO:K03781] [EC:1.11.1.6]
114393204  catalase-1/2 [KO:K03781] [EC:1.11.1.6]
114418519  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
114418522  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
114418524  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
114418344  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
114389056  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
114377558  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
114402970  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
114369623  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
114425140  phosphoglycolate phosphatase 1B, chloroplastic-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
114396766  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
114368909  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
17675602  rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
114399962  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
114400512  ribulose bisphosphate carboxylase small chain 1, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
114381856  ribulose bisphosphate carboxylase small chain 1, chloroplastic [KO:K01602] [EC:4.1.1.39]
114381256  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
114423302  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
114396764  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
114409594  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
114380572  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
114406643  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
114400728  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
114396645  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
114398058  glutamine synthetase cytosolic isozyme 2-like isoform X1 [KO:K01915] [EC:6.3.1.2]
114418700  glutamine synthetase PR-2 [KO:K01915] [EC:6.3.1.2]
114381924  glutamine synthetase cytosolic isozyme 1 isoform X1 [KO:K01915] [EC:6.3.1.2]
114368750  glutamine synthetase PR-2-like [KO:K01915] [EC:6.3.1.2]
114386345  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
114383483  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
114375809  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
114423034  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
114412881  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
114395743  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
114421648  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
114415361  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
114422266  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
114396330  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
114368937  serine hydroxymethyltransferase, mitochondrial-like isoform X1 [KO:K00600] [EC:2.1.2.1]
114384573  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
114379425  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
114376038  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
114414819  glycine dehydrogenase (decarboxylating), mitochondrial-like isoform X1 [KO:K00281] [EC:1.4.4.2]
114408819  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
114393669  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
114384869  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
114420185  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
114388631  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
114393256  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
114367918  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
114419928  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
114419982  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
114392256  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
114388466  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
114394030  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
114367743  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
114419784  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
114422888  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
114403751  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
114401680  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
114375832  glycine cleavage system H protein, mitochondrial [KO:K02437]
114386362  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
114377266  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
114400294  formate dehydrogenase 1, mitochondrial-like isoform X1 [KO:K00122] [EC:1.17.1.9]
114399039  formate dehydrogenase 1, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
114376174  formate dehydrogenase 1, mitochondrial-like isoform X1 [KO:K00122] [EC:1.17.1.9]
114412178  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
114423581  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
114393873  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
114394036  uncharacterized protein LOC114394036 [KO:K01455] [EC:3.5.1.49]
114401524  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
114368067  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
114376771  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gsj00010  Glycolysis / Gluconeogenesis
gsj00020  Citrate cycle (TCA cycle)
gsj00030  Pentose phosphate pathway
gsj00053  Ascorbate and aldarate metabolism
gsj00071  Fatty acid degradation
gsj00230  Purine metabolism
gsj00250  Alanine, aspartate and glutamate metabolism
gsj00260  Glycine, serine and threonine metabolism
gsj00620  Pyruvate metabolism
gsj00710  Carbon fixation by Calvin cycle
gsj00750  Vitamin B6 metabolism
gsj00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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