KEGG   PATHWAY: gsr03030
Entry
gsr03030                    Pathway                                
Name
DNA replication - Geobacillus subterraneus
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
gsr03030  DNA replication
gsr03030

Organism
Geobacillus subterraneus [GN:gsr]
Gene
GS3922_09340  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
GS3922_02495  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
GS3922_10230  polC; DNA polymerase III subunit alpha [KO:K03763] [EC:2.7.7.7]
GS3922_15650  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
GS3922_15585  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
GS3922_03590  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
GS3922_15755  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
GS3922_15875  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
GS3922_03735  DNA primase [KO:K02316] [EC:2.7.7.101]
GS3922_00305  single-stranded DNA-binding protein [KO:K03111]
GS3922_15850  single-stranded DNA-binding protein [KO:K03111]
GS3922_09755  hypothetical protein [KO:K03469] [EC:3.1.26.4]
GS3922_10495  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
GS3922_02725  ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
GS3922_02565  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
GS3922_14230  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
GS3922_09515  AAA family ATPase [KO:K10742] [EC:5.6.2.3 3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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