KEGG   PATHWAY: habo00020
Entry
habo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halobacterium sp. BOL4-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
habo00020  Citrate cycle (TCA cycle)
habo00020

Module
habo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:habo00020]
habo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:habo00020]
habo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:habo00020]
habo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:habo00020]
Other DBs
GO: 0006099
Organism
Halobacterium sp. BOL4-2 [GN:habo]
Gene
JRZ79_08180  citrate synthase [KO:K01647] [EC:2.3.3.1]
JRZ79_10425  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JRZ79_11405  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JRZ79_07285  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JRZ79_08685  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JRZ79_01765  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JRZ79_01760  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JRZ79_06010  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JRZ79_06005  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JRZ79_08975  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
JRZ79_05090  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
JRZ79_05095  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JRZ79_05105  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JRZ79_05100  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
JRZ79_05285  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JRZ79_09290  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JRZ79_07500  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JRZ79_08670  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JRZ79_08675  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JRZ79_08680  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JRZ79_04375  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
JRZ79_04370  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
habo00010  Glycolysis / Gluconeogenesis
habo00053  Ascorbate and aldarate metabolism
habo00061  Fatty acid biosynthesis
habo00071  Fatty acid degradation
habo00190  Oxidative phosphorylation
habo00220  Arginine biosynthesis
habo00250  Alanine, aspartate and glutamate metabolism
habo00280  Valine, leucine and isoleucine degradation
habo00350  Tyrosine metabolism
habo00470  D-Amino acid metabolism
habo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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