KEGG   PATHWAY: hae00020
Entry
hae00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halohasta litchfieldiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hae00020  Citrate cycle (TCA cycle)
hae00020

Module
hae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hae00020]
hae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hae00020]
hae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hae00020]
hae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hae00020]
Other DBs
GO: 0006099
Organism
Halohasta litchfieldiae [GN:hae]
Gene
halTADL_0686  citrate synthase [KO:K01647] [EC:2.3.3.1]
halTADL_0824  citrate synthase [KO:K01647] [EC:2.3.3.1]
halTADL_2902  aconitase [KO:K01681] [EC:4.2.1.3]
halTADL_0758  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
halTADL_2144  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
halTADL_0430  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
halTADL_1013  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
halTADL_1012  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
halTADL_0569  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
halTADL_0568  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
halTADL_0445  succinate dehydrogenase / fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
halTADL_0783  succinate dehydrogenase / fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
halTADL_0444  succinate dehydrogenase / fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
halTADL_0442  succinate dehydrogenase subunit C [KO:K00241]
halTADL_0443  succinate dehydrogenase subunit D [KO:K00242]
halTADL_0161  fumarase class II [KO:K01679] [EC:4.2.1.2]
halTADL_2052  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
halTADL_2149  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
halTADL_2148  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
halTADL_2147  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
halTADL_0382  pyruvate ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
halTADL_0383  pyruvate ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hae00010  Glycolysis / Gluconeogenesis
hae00053  Ascorbate and aldarate metabolism
hae00061  Fatty acid biosynthesis
hae00071  Fatty acid degradation
hae00190  Oxidative phosphorylation
hae00220  Arginine biosynthesis
hae00250  Alanine, aspartate and glutamate metabolism
hae00280  Valine, leucine and isoleucine degradation
hae00350  Tyrosine metabolism
hae00470  D-Amino acid metabolism
hae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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