KEGG   PATHWAY: hah00020
Entry
hah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halophilic archaeon DL31
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hah00020  Citrate cycle (TCA cycle)
hah00020

Module
hah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hah00020]
hah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hah00020]
hah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hah00020]
hah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hah00020]
Other DBs
GO: 0006099
Organism
Halophilic archaeon DL31 [GN:hah]
Gene
Halar_3296  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Halar_1908  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Halar_3418  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
Halar_2872  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Halar_2852  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Halar_0852  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Halar_0853  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Halar_3401  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Halar_3400  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Halar_0324  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Halar_1932  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Halar_1933  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Halar_1935  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Halar_1934  succinate dehydrogenase subunit D [KO:K00242]
Halar_2608  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Halar_2281  L-lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Halar_2849  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Halar_2850  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Halar_2851  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Halar_3527  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Halar_3528  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hah00010  Glycolysis / Gluconeogenesis
hah00053  Ascorbate and aldarate metabolism
hah00061  Fatty acid biosynthesis
hah00071  Fatty acid degradation
hah00190  Oxidative phosphorylation
hah00220  Arginine biosynthesis
hah00250  Alanine, aspartate and glutamate metabolism
hah00280  Valine, leucine and isoleucine degradation
hah00350  Tyrosine metabolism
hah00470  D-Amino acid metabolism
hah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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