KEGG   PATHWAY: halr00020
Entry
halr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halarchaeum sp. CBA1220
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halr00020  Citrate cycle (TCA cycle)
halr00020

Module
halr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:halr00020]
halr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:halr00020]
halr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:halr00020]
halr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:halr00020]
Other DBs
GO: 0006099
Organism
Halarchaeum sp. CBA1220 [GN:halr]
Gene
EFA46_002555  citrate synthase [KO:K01647] [EC:2.3.3.1]
EFA46_004685  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EFA46_014395  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EFA46_001905  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
EFA46_003350  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EFA46_006385  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EFA46_006380  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EFA46_000690  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EFA46_000685  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EFA46_000425  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
EFA46_000420  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EFA46_000410  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EFA46_000415  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
EFA46_008885  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EFA46_004060  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EFA46_012905  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EFA46_008520  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
EFA46_008525  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halr00010  Glycolysis / Gluconeogenesis
halr00053  Ascorbate and aldarate metabolism
halr00061  Fatty acid biosynthesis
halr00071  Fatty acid degradation
halr00190  Oxidative phosphorylation
halr00220  Arginine biosynthesis
halr00250  Alanine, aspartate and glutamate metabolism
halr00280  Valine, leucine and isoleucine degradation
halr00350  Tyrosine metabolism
halr00470  D-Amino acid metabolism
halr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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