KEGG   PATHWAY: hcj00020
Entry
hcj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hydrogenimonas cancrithermarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hcj00020  Citrate cycle (TCA cycle)
hcj00020

Module
hcj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hcj00020]
hcj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hcj00020]
hcj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hcj00020]
Other DBs
GO: 0006099
Organism
Hydrogenimonas cancrithermarum [GN:hcj]
Gene
HCR_21500  ATP citrate lyase [KO:K15230] [EC:2.3.3.8]
HCR_21490  ATP citrate lyase [KO:K15231] [EC:2.3.3.8]
HCR_04900  acn; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HCR_04830  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HCR_00690  bkdD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HCR_04750  oorA; 2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HCR_04740  oorB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HCR_04730  oorC; 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
HCR_04760  oorD; 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
HCR_04780  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
HCR_04790  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
HCR_01440  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HCR_01430  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HCR_01420  succinate dehydrogenase [KO:K00241]
HCR_01460  frdA_1; fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HCR_01450  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HCR_01470  frdC; fumarate reductase cytochrome b subunit [KO:K25996]
HCR_04810  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
HCR_04800  fumX; fumarate hydratase [KO:K01678] [EC:4.2.1.2]
HCR_20230  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HCR_04820  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HCR_20920  pycB; biotin attachment protein [KO:K01960] [EC:6.4.1.1]
HCR_08160  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
HCR_00620  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HCR_00630  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HCR_00640  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
HCR_00670  hypothetical protein [KO:K00627] [EC:2.3.1.12]
HCR_11110  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HCR_11100  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
HCR_11130  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HCR_11120  porD; ferredoxin [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hcj00010  Glycolysis / Gluconeogenesis
hcj00053  Ascorbate and aldarate metabolism
hcj00061  Fatty acid biosynthesis
hcj00071  Fatty acid degradation
hcj00190  Oxidative phosphorylation
hcj00220  Arginine biosynthesis
hcj00250  Alanine, aspartate and glutamate metabolism
hcj00280  Valine, leucine and isoleucine degradation
hcj00350  Tyrosine metabolism
hcj00470  D-Amino acid metabolism
hcj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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