KEGG   PATHWAY: hdf00020
Entry
hdf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halalkaliarchaeum desulfuricum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hdf00020  Citrate cycle (TCA cycle)
hdf00020

Module
hdf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hdf00020]
hdf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hdf00020]
hdf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hdf00020]
hdf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hdf00020]
Other DBs
GO: 0006099
Organism
Halalkaliarchaeum desulfuricum [GN:hdf]
Gene
AArcSl_0703  gltA2; citrate synthase [KO:K01647] [EC:2.3.3.1]
AArcSl_0433  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AArcSl_0997  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AArcSl_3094  acnA2; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AArcSl_2019  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AArcSl_0408  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AArcSl_1540  oorA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AArcSl_1852  oorA2; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AArcSl_2425  oorA3; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AArcSl_1539  oorB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AArcSl_1853  oorB2; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AArcSl_2424  oorB3; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AArcSl_1854  oorC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
AArcSl_1851  oorD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
AArcSl_2426  oorD2; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
AArcSl_1161  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
AArcSl_1162  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
AArcSl_1133  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AArcSl_1134  sdhA2; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AArcSl_1135  sdhB; succinate dehydrogenase/fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AArcSl_1137  sdhC; succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
AArcSl_1136  sdhD; succinate dehydrogenase/fumarate reductase, membrane anchor subunit [KO:K00242]
AArcSl_0769  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AArcSl_1828  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AArcSl_1433  pdhA2; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
AArcSl_0405  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
AArcSl_0406  pdhB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
AArcSl_0407  pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
AArcSl_1848  porA3; pyruvate ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
AArcSl_0120  porA; pyruvate ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
AArcSl_1132  porA2; pyruvate ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
AArcSl_1131  porB2; pyruvate ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
AArcSl_0121  porB; pyruvate ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
AArcSl_1849  porB3; pyruvate ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
AArcSl_1846  porG2; pyruvate ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
AArcSl_0118  porG; pyruvate ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
AArcSl_0119  porD; pyruvate ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
AArcSl_1847  porD2; pyruvate ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hdf00010  Glycolysis / Gluconeogenesis
hdf00053  Ascorbate and aldarate metabolism
hdf00061  Fatty acid biosynthesis
hdf00071  Fatty acid degradation
hdf00190  Oxidative phosphorylation
hdf00220  Arginine biosynthesis
hdf00250  Alanine, aspartate and glutamate metabolism
hdf00280  Valine, leucine and isoleucine degradation
hdf00350  Tyrosine metabolism
hdf00470  D-Amino acid metabolism
hdf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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