KEGG   PATHWAY: hdl00020
Entry
hdl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halobacterium sp. DL1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hdl00020  Citrate cycle (TCA cycle)
hdl00020

Module
hdl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hdl00020]
hdl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hdl00020]
hdl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hdl00020]
hdl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hdl00020]
hdl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hdl00020]
Other DBs
GO: 0006099
Organism
Halobacterium sp. DL1 [GN:hdl]
Gene
HALDL1_12095  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HALDL1_15410  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HALDL1_02930  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HALDL1_00170  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HALDL1_14385  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HALDL1_04660  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HALDL1_02400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HALDL1_06500  oxoglutarate--ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HALDL1_06495  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HALDL1_12660  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
HALDL1_12655  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HALDL1_10075  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
HALDL1_10080  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
HALDL1_10090  succinate dehydrogenase [KO:K00241]
HALDL1_10085  succinate dehydrogenase [KO:K00242]
HALDL1_10530  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
HALDL1_16470  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HALDL1_12670  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HALDL1_11250  2-oxoacid dehydrogenase [KO:K00161] [EC:1.2.4.1]
HALDL1_02415  2-oxoacid dehydrogenase [KO:K00161] [EC:1.2.4.1]
HALDL1_14615  2-oxoacid dehydrogenase [KO:K00161] [EC:1.2.4.1]
HALDL1_08745  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
HALDL1_11245  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
HALDL1_02410  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HALDL1_08750  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HALDL1_11240  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
HALDL1_02405  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HALDL1_11590  2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HALDL1_11585  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hdl00010  Glycolysis / Gluconeogenesis
hdl00053  Ascorbate and aldarate metabolism
hdl00061  Fatty acid biosynthesis
hdl00071  Fatty acid degradation
hdl00190  Oxidative phosphorylation
hdl00220  Arginine biosynthesis
hdl00250  Alanine, aspartate and glutamate metabolism
hdl00280  Valine, leucine and isoleucine degradation
hdl00350  Tyrosine metabolism
hdl00470  D-Amino acid metabolism
hdl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system