KEGG   PATHWAY: hea03030
Entry
hea03030                    Pathway                                
Name
DNA replication - Herbiconiux sp. SALV-R1
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hea03030  DNA replication
hea03030

Organism
Herbiconiux sp. SALV-R1 [GN:hea]
Gene
HL652_07745  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
HL652_12055  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
HL652_06970  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
HL652_13965  DNA polymerase III subunit gamma and tau [KO:K02343] [EC:2.7.7.7]
HL652_13365  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
HL652_04790  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
HL652_18865  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
HL652_04395  AAA family ATPase [KO:K02314] [EC:5.6.2.3]
HL652_12500  AAA family ATPase [KO:K02314] [EC:5.6.2.3]
HL652_18750  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
HL652_08725  DNA primase [KO:K02316] [EC:2.7.7.101]
HL652_04520  single-stranded DNA-binding protein [KO:K03111]
HL652_18765  single-stranded DNA-binding protein [KO:K03111]
HL652_11620  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
HL652_03890  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
HL652_08000  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
HL652_04070  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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