KEGG   PATHWAY: heg00020
Entry
heg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori Gambia94/24
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
heg00020  Citrate cycle (TCA cycle)
heg00020

Module
heg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:heg00020]
heg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:heg00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori Gambia94/24 [GN:heg]
Gene
HPGAM_00125  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
HPGAM_04020  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HPGAM_00130  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPGAM_03035  oorA; 2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HPGAM_03040  oorB; 2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HPGAM_03045  oorC; 2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
HPGAM_03030  oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
HPGAM_00980  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HPGAM_00975  frdB; fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HPGAM_00985  fumarate reductase cytochrome b-556 subunit [KO:K25996]
HPGAM_06845  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPGAM_00470  hypothetical protein [KO:K00116] [EC:1.1.5.4]
HPGAM_05720  porA; pyruvate flavodoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HPGAM_05725  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HPGAM_05710  pyruvate flavodoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
HPGAM_05715  porD; pyruvate flavodoxin oxidoreductase subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
heg00010  Glycolysis / Gluconeogenesis
heg00061  Fatty acid biosynthesis
heg00071  Fatty acid degradation
heg00190  Oxidative phosphorylation
heg00220  Arginine biosynthesis
heg00250  Alanine, aspartate and glutamate metabolism
heg00280  Valine, leucine and isoleucine degradation
heg00470  D-Amino acid metabolism
heg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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