KEGG   PATHWAY: hhe00020
Entry
hhe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter hepaticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hhe00020  Citrate cycle (TCA cycle)
hhe00020

Module
hhe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hhe00020]
hhe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hhe00020]
Other DBs
GO: 0006099
Organism
Helicobacter hepaticus [GN:hhe]
Gene
HH_1493  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
HH_1737  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HH_1196  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HH_1569  oorA; OorA subunit of 2-oxoglutarate:acceptor oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HH_1568  oorB; OorB subunit of 2-oxoglutarate:acceptor oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HH_1567  oorC; OorC subunit of 2-oxoglutarate:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
HH_1570  oorD; OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [KO:K00176] [EC:1.2.7.3]
HH_1813  conserved hypothetical protein [KO:K00241]
HH_0686  frdA; fumarate reductase [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HH_0687  frdB; fumarate reductase [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HH_0685  frdC; fumarate reductase [KO:K25996]
HH_1792  ttdA; fumarate hydratase [KO:K01677] [EC:4.2.1.2]
HH_1793  ttdB; fumarate hydratase [KO:K01678] [EC:4.2.1.2]
HH_1571  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HH_1720  conserved hypothetical protein [KO:K00116] [EC:1.1.5.4]
HH_1849  conserved hypothetical protein [KO:K01959] [EC:6.4.1.1]
HH_1686  pycB; oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
HH_0547  porA; Pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
HH_0546  porB; Pyruvate:ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
HH_0549  porG; Pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
HH_0548  porD; Pyruvate:ferredoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hhe00010  Glycolysis / Gluconeogenesis
hhe00061  Fatty acid biosynthesis
hhe00190  Oxidative phosphorylation
hhe00220  Arginine biosynthesis
hhe00250  Alanine, aspartate and glutamate metabolism
hhe00280  Valine, leucine and isoleucine degradation
hhe00350  Tyrosine metabolism
hhe00470  D-Amino acid metabolism
hhe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system