KEGG   PATHWAY: hho00020
Entry
hho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hydrogenobaculum sp. HO
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hho00020  Citrate cycle (TCA cycle)
hho00020

Module
hho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hho00020]
Other DBs
GO: 0006099
Organism
Hydrogenobaculum sp. HO [GN:hho]
Gene
HydHO_0598  aconitase [KO:K01681] [EC:4.2.1.3]
HydHO_1413  Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
HydHO_0328  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
HydHO_1229  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HydHO_1417  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HydHO_0083  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HydHO_0525  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HydHO_1418  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HydHO_0919  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
HydHO_0920  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
HydHO_0483  fumarase, class II [KO:K01679] [EC:4.2.1.2]
HydHO_0597  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
HydHO_0776  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
HydHO_0620  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
HydHO_1613  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
HydHO_0044  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
HydHO_1614  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
HydHO_0043  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
HydHO_0042  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HydHO_1615  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HydHO_0041  2-oxoglutarate:ferredoxin oxidoreductase epsilon subunit, ferredoxin-like protein [KO:K00171] [EC:1.2.7.1]
HydHO_1054  pyruvate:ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hho00010  Glycolysis / Gluconeogenesis
hho00053  Ascorbate and aldarate metabolism
hho00061  Fatty acid biosynthesis
hho00190  Oxidative phosphorylation
hho00220  Arginine biosynthesis
hho00250  Alanine, aspartate and glutamate metabolism
hho00280  Valine, leucine and isoleucine degradation
hho00350  Tyrosine metabolism
hho00470  D-Amino acid metabolism
hho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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