KEGG   PATHWAY: hje00020
Entry
hje00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halalkalicoccus jeotgali
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hje00020  Citrate cycle (TCA cycle)
hje00020

Module
hje_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hje00020]
hje_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hje00020]
hje_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hje00020]
hje_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hje00020]
hje_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hje00020]
Other DBs
GO: 0006099
Organism
Halalkalicoccus jeotgali [GN:hje]
Gene
HacjB3_01535  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HacjB3_13230  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HacjB3_06550  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HacjB3_00135  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HacjB3_14410  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HacjB3_14415  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HacjB3_06870  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
HacjB3_06875  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HacjB3_08865  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HacjB3_08870  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
HacjB3_08880  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HacjB3_08875  succinate dehydrogenase subunit D [KO:K00242]
HacjB3_07560  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HacjB3_17638  L-lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HacjB3_00765  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HacjB3_08955  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HacjB3_02280  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
HacjB3_04965  2-oxoacid dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
HacjB3_00120  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
HacjB3_00125  Transketolase central region [KO:K00162] [EC:1.2.4.1]
HacjB3_00130  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HacjB3_08110  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
HacjB3_08115  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hje00010  Glycolysis / Gluconeogenesis
hje00053  Ascorbate and aldarate metabolism
hje00061  Fatty acid biosynthesis
hje00071  Fatty acid degradation
hje00190  Oxidative phosphorylation
hje00220  Arginine biosynthesis
hje00250  Alanine, aspartate and glutamate metabolism
hje00280  Valine, leucine and isoleucine degradation
hje00350  Tyrosine metabolism
hje00470  D-Amino acid metabolism
hje00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system