KEGG   PATHWAY: hjt00020
Entry
hjt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Natrinema thermotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hjt00020  Citrate cycle (TCA cycle)
hjt00020

Module
hjt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hjt00020]
hjt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hjt00020]
hjt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hjt00020]
hjt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hjt00020]
hjt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hjt00020]
Other DBs
GO: 0006099
Organism
Natrinema thermotolerans [GN:hjt]
Gene
DVR14_12995  citrate synthase [KO:K01647] [EC:2.3.3.1]
DVR14_11835  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DVR14_02400  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DVR14_07480  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
DVR14_10530  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DVR14_22725  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DVR14_18590  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DVR14_22720  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DVR14_18585  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DVR14_17275  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DVR14_21405  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DVR14_17270  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DVR14_21400  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DVR14_03125  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
DVR14_03180  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
DVR14_03175  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DVR14_03165  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DVR14_03170  succinate dehydrogenase [KO:K00242]
DVR14_19605  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DVR14_09205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DVR14_18730  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DVR14_02000  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DVR14_11435  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DVR14_10515  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DVR14_10520  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DVR14_10525  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DVR14_04700  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DVR14_04695  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hjt00010  Glycolysis / Gluconeogenesis
hjt00053  Ascorbate and aldarate metabolism
hjt00061  Fatty acid biosynthesis
hjt00071  Fatty acid degradation
hjt00190  Oxidative phosphorylation
hjt00220  Arginine biosynthesis
hjt00250  Alanine, aspartate and glutamate metabolism
hjt00280  Valine, leucine and isoleucine degradation
hjt00350  Tyrosine metabolism
hjt00470  D-Amino acid metabolism
hjt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system