KEGG   PATHWAY: hmo00020
Entry
hmo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Heliomicrobium modesticaldum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hmo00020  Citrate cycle (TCA cycle)
hmo00020

Module
hmo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hmo00020]
hmo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hmo00020]
hmo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hmo00020]
Other DBs
GO: 0006099
Organism
Heliomicrobium modesticaldum [GN:hmo]
Gene
HM1_0105  aco; aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
HM1_1471  icd; isocitrate dehydrogenase, nADP-dependent [KO:K00031] [EC:1.1.1.42]
HM1_0805  oorA; 2-oxoacid:ferredoxin oxidoreductase, alpha subunit, putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HM1_0358  oorA; 2-oxoacid:ferredoxin oxidoreductase, alpha subunit, putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HM1_2766  korA; 2-oxoglutarate oxidoreductase, alpha subunit, putative [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HM1_0804  ketoisovalerate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HM1_0359  ketoisovalerate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HM1_2763  oorB; 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HM1_0803  oorC; 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
HM1_0360  ketoisovalerate oxidoreductase [KO:K00177] [EC:1.2.7.3]
HM1_2762  korC; 2-oxoglutarate oxidoreductase, gamma subunit, putative [KO:K00177] [EC:1.2.7.3]
HM1_0357  4fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
HM1_2767  4fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
HM1_0802  oorD; 2-oxoacid:ferredoxin oxidoreductase, delta subunit, putative [KO:K00176] [EC:1.2.7.3]
HM1_0375  sucD; succinyl-coa synthetase alpha chain 2 [KO:K01902] [EC:6.2.1.5]
HM1_0374  sucC; succinyl-coa synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
HM1_1448  acetyl-CoA hydrolase, putative [KO:K18118] [EC:2.8.3.18]
HM1_0345  acetyl-CoA hydrolase, putative [KO:K18118] [EC:2.8.3.18]
HM1_0372  sdhA; succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HM1_0373  sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
HM1_0371  sdhC; succinate dehydrogenase (cytochrome b558 subunit) [KO:K00241]
HM1_0463  ttdA; tartrate dehydratase alpha subunit/fumarate hydratase [KO:K01677] [EC:4.2.1.2]
HM1_0464  fumB; fumarate hydratase, beta subunit [KO:K01678] [EC:4.2.1.2]
HM1_1472  mdh; malate dehydrogenase, nad-dependent [KO:K00024] [EC:1.1.1.37]
HM1_2773  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HM1_0807  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hmo00010  Glycolysis / Gluconeogenesis
hmo00061  Fatty acid biosynthesis
hmo00071  Fatty acid degradation
hmo00190  Oxidative phosphorylation
hmo00220  Arginine biosynthesis
hmo00250  Alanine, aspartate and glutamate metabolism
hmo00280  Valine, leucine and isoleucine degradation
hmo00350  Tyrosine metabolism
hmo00470  D-Amino acid metabolism
hmo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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