KEGG   PATHWAY: hpel03030
Entry
hpel03030                   Pathway                                
Name
DNA replication - Halosimplex pelagicum
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hpel03030  DNA replication
hpel03030

Organism
Halosimplex pelagicum [GN:hpel]
Gene
HZS54_17185  DNA primase [KO:K02316] [EC:2.7.7.101]
HZS54_09515  ribonuclease HI family protein [KO:K03469] [EC:3.1.26.4]
HZS54_05700  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
HZS54_24495  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
HZS54_12020  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
HZS54_23695  hypothetical protein [KO:K02319] [EC:2.7.7.7]
HZS54_03765  DNA-directed DNA polymerase II small subunit [KO:K02323] [EC:2.7.7.7]
HZS54_03225  type III effector protein [KO:K02322] [EC:2.7.7.7]
HZS54_02555  helix-turn-helix domain-containing protein [KO:K10726] [EC:5.6.2.3]
HZS54_04610  minichromosome maintenance protein MCM [KO:K10726] [EC:5.6.2.3]
HZS54_18490  priS; DNA primase small subunit PriS [KO:K02683] [EC:2.7.7.102]
HZS54_03210  priL; DNA primase regulatory subunit PriL [KO:K18882]
HZS54_24375  single-stranded DNA binding protein [KO:K07466]
HZS54_03375  DNA polymerase sliding clamp [KO:K04802]
HZS54_11260  DNA polymerase sliding clamp [KO:K04802]
HZS54_00005  AAA family ATPase [KO:K04801]
HZS54_00115  replication factor C small subunit [KO:K04801]
HZS54_14165  replication factor C large subunit [KO:K04800]
HZS54_21060  AAA family ATPase [KO:K10742] [EC:5.6.2.3 3.1.-.-]
HZS54_00825  fen; flap endonuclease-1 [KO:K04799] [EC:3.1.-.-]
HZS54_12380  flap structure-specific endonuclease [KO:K04799] [EC:3.1.-.-]
HZS54_20915  ATP-dependent DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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