KEGG   PATHWAY: hpi03430
Entry
hpi03430                    Pathway                                
Name
Mismatch repair - Helicobacter pylori 908
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hpi03430  Mismatch repair
hpi03430

Other DBs
GO: 0006298
Organism
Helicobacter pylori 908 [GN:hpi]
Gene
hp908_0632  mutS2; Recombination inhibitory protein [KO:K07456]
hp908_0924  uvrD; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
hp908_1462  uvrD; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
hp908_0271  xseA1; Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
hp908_1466  xseA2; Probable exo deoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
hp908_0356  recJ; Single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
hp908_1442  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
hp908_0498  dnaN1; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
hp908_0725  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
hp908_1246  hypothetical protein [KO:K02340] [EC:2.7.7.7]
hp908_1231  holB; DNA poymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
hp908_1542  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
hp908_0624  ligA; NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
hp908_0475  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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