KEGG   PATHWAY: hsf00020
Entry
hsf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halanaeroarchaeum sulfurireducens M27-SA2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsf00020  Citrate cycle (TCA cycle)
hsf00020

Module
hsf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hsf00020]
hsf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsf00020]
hsf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hsf00020]
hsf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsf00020]
Other DBs
GO: 0006099
Organism
Halanaeroarchaeum sulfurireducens M27-SA2 [GN:hsf]
Gene
HLASA_0233  gltA2; 2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HLASA_1088  citZ; 2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HLASA_0248  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HLASA_1907  icd; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
HLASA_2067  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLASA_0745  porA2; 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HLASA_0744  porB2; 2-oxoglutarate:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HLASA_1687  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
HLASA_1686  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HLASA_2120  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
HLASA_1566  sdhA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
HLASA_1565  sdhB; succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
HLASA_1563  sdhC; succinate dehydrogenase subunit C (cytochrome b-556) [KO:K00241]
HLASA_1564  sdhD; succinate dehydrogenase subunit D [KO:K00242]
HLASA_1077  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HLASA_0041  mdhA; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HLASA_0490  porA1; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HLASA_1456  korA; 2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HLASA_0489  porB1; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HLASA_1457  korB; 2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
HLASA_0492  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HLASA_0491  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsf00010  Glycolysis / Gluconeogenesis
hsf00053  Ascorbate and aldarate metabolism
hsf00061  Fatty acid biosynthesis
hsf00071  Fatty acid degradation
hsf00190  Oxidative phosphorylation
hsf00220  Arginine biosynthesis
hsf00250  Alanine, aspartate and glutamate metabolism
hsf00280  Valine, leucine and isoleucine degradation
hsf00350  Tyrosine metabolism
hsf00470  D-Amino acid metabolism
hsf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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