KEGG   PATHWAY: hsi03430
Entry
hsi03430                    Pathway                                
Name
Mismatch repair - Halomonas aestuarii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hsi03430  Mismatch repair
hsi03430

Other DBs
GO: 0006298
Organism
Halomonas aestuarii [GN:hsi]
Gene
BOX17_10230  DNA mismatch repair protein MutS [KO:K03555]
BOX17_03180  DNA mismatch repair protein MutL [KO:K03572]
BOX17_07715  DNA helicase II [KO:K03657] [EC:5.6.2.4]
BOX17_01495  DNA helicase UvrD [KO:K03657] [EC:5.6.2.4]
BOX17_09630  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
BOX17_10485  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
BOX17_08155  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
BOX17_09710  DHH family phosphoesterase [KO:K07462] [EC:3.1.-.-]
BOX17_09130  single-stranded DNA-binding protein [KO:K03111]
BOX17_10015  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BOX17_07950  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BOX17_13320  hypothetical protein [KO:K02343] [EC:2.7.7.7]
BOX17_14015  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BOX17_01515  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BOX17_00385  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_11565  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_15200  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_11105  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BOX17_05565  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
BOX17_10375  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
BOX17_06420  DNA ligase B [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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