KEGG   PATHWAY: hsn00020
Entry
hsn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halapricum salinum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsn00020  Citrate cycle (TCA cycle)
hsn00020

Module
hsn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hsn00020]
hsn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsn00020]
hsn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hsn00020]
hsn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsn00020]
Other DBs
GO: 0006099
Organism
Halapricum salinum [GN:hsn]
Gene
DV733_00615  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DV733_09880  citrate synthase [KO:K01647] [EC:2.3.3.1]
DV733_01370  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DV733_11975  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
DV733_08515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DV733_05575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DV733_15760  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DV733_15755  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DV733_04655  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DV733_04650  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DV733_15065  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
DV733_06770  FAD-dependent oxidoreductase [KO:K00239] [EC:1.3.5.1]
DV733_15070  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DV733_15080  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DV733_15075  succinate dehydrogenase [KO:K00242]
DV733_15505  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DV733_08435  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DV733_11605  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DV733_00835  thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DV733_11600  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DV733_11595  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DV733_16630  pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
DV733_01545  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DV733_16635  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
DV733_01540  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
DV733_16620  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
DV733_16625  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsn00010  Glycolysis / Gluconeogenesis
hsn00053  Ascorbate and aldarate metabolism
hsn00061  Fatty acid biosynthesis
hsn00071  Fatty acid degradation
hsn00190  Oxidative phosphorylation
hsn00220  Arginine biosynthesis
hsn00250  Alanine, aspartate and glutamate metabolism
hsn00280  Valine, leucine and isoleucine degradation
hsn00350  Tyrosine metabolism
hsn00470  D-Amino acid metabolism
hsn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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