KEGG   PATHWAY: hsu00020
Entry
hsu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halanaeroarchaeum sulfurireducens HSR2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsu00020  Citrate cycle (TCA cycle)
hsu00020

Module
hsu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hsu00020]
hsu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsu00020]
hsu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hsu00020]
hsu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsu00020]
Other DBs
GO: 0006099
Organism
Halanaeroarchaeum sulfurireducens HSR2 [GN:hsu]
Gene
HLASF_0233  gltA2; 2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HLASF_1099  citZ; 2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
HLASF_0248  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HLASF_1921  icd; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
HLASF_2033  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLASF_0748  porA2; 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HLASF_0747  porB2; 2-oxoglutarate:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HLASF_1700  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
HLASF_1699  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
HLASF_2086  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
HLASF_1579  sdhA; succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
HLASF_1578  sdhB; succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
HLASF_1576  sdhC; succinate dehydrogenase subunit C (cytochrome b-556) [KO:K00241]
HLASF_1577  sdhD; succinate dehydrogenase subunit D [KO:K00242]
HLASF_1088  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HLASF_0041  mdhA; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HLASF_0493  porA1; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HLASF_1469  korA; 2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
HLASF_0492  porB1; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HLASF_1470  korB; 2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
HLASF_0495  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HLASF_0494  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsu00010  Glycolysis / Gluconeogenesis
hsu00053  Ascorbate and aldarate metabolism
hsu00061  Fatty acid biosynthesis
hsu00071  Fatty acid degradation
hsu00190  Oxidative phosphorylation
hsu00220  Arginine biosynthesis
hsu00250  Alanine, aspartate and glutamate metabolism
hsu00280  Valine, leucine and isoleucine degradation
hsu00350  Tyrosine metabolism
hsu00470  D-Amino acid metabolism
hsu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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