KEGG   PATHWAY: hta00020
Entry
hta00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haloarcula taiwanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hta00020  Citrate cycle (TCA cycle)
hta00020

Module
hta_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hta00020]
hta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hta00020]
hta_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hta00020]
hta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hta00020]
hta_M00740  Methylaspartate cycle [PATH:hta00020]
Other DBs
GO: 0006099
Organism
Haloarcula taiwanensis [GN:hta]
Gene
BVU17_14290  citrate synthase [KO:K01647] [EC:2.3.3.1]
BVU17_12785  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BVU17_03180  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BVU17_17460  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BVU17_01005  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BVU17_06645  oxoglutarate--ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BVU17_06650  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BVU17_05680  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BVU17_05685  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BVU17_08225  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BVU17_04380  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BVU17_08210  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BVU17_08200  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BVU17_08205  succinate dehydrogenase [KO:K00242]
BVU17_03880  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BVU17_15090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BVU17_04410  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BVU17_17475  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BVU17_01025  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BVU17_01020  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BVU17_17470  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BVU17_01015  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BVU17_17465  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BVU17_09010  2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
BVU17_09015  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hta00010  Glycolysis / Gluconeogenesis
hta00053  Ascorbate and aldarate metabolism
hta00061  Fatty acid biosynthesis
hta00071  Fatty acid degradation
hta00190  Oxidative phosphorylation
hta00220  Arginine biosynthesis
hta00250  Alanine, aspartate and glutamate metabolism
hta00280  Valine, leucine and isoleucine degradation
hta00350  Tyrosine metabolism
hta00470  D-Amino acid metabolism
hta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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