KEGG   PATHWAY: hyi00030
Entry
hyi00030                    Pathway                                
Name
Pentose phosphate pathway - Hydrogenibacillus sp. N12
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hyi00030  Pentose phosphate pathway
hyi00030

Module
hyi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:hyi00030]
hyi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:hyi00030]
Other DBs
GO: 0006098
Organism
Hydrogenibacillus sp. N12 [GN:hyi]
Gene
K2M58_01930  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
K2M58_03120  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
K2M58_06940  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
K2M58_03145  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
K2M58_12175  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
K2M58_03035  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
K2M58_07880  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
K2M58_01435  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
K2M58_06510  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
K2M58_12300  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
K2M58_00270  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
K2M58_08270  aldehyde ferredoxin oxidoreductase family protein [KO:K03738] [EC:1.2.7.5]
K2M58_03100  ketose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
K2M58_12180  fba; class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
K2M58_03115  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
K2M58_12165  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
K2M58_10265  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
hyi00010  Glycolysis / Gluconeogenesis
hyi00040  Pentose and glucuronate interconversions
hyi00052  Galactose metabolism
hyi00230  Purine metabolism
hyi00240  Pyrimidine metabolism
hyi00340  Histidine metabolism
hyi00630  Glyoxylate and dicarboxylate metabolism
hyi00750  Vitamin B6 metabolism
KO pathway
ko00030   
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