KEGG   PATHWAY: hyo00020
Entry
hyo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hydrogenimonas sp. MAG
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hyo00020  Citrate cycle (TCA cycle)
hyo00020

Module
hyo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hyo00020]
hyo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hyo00020]
hyo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hyo00020]
hyo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hyo00020]
hyo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hyo00020]
Other DBs
GO: 0006099
Organism
Hydrogenimonas sp. MAG [GN:hyo]
Gene
NNO_1376  citrate synthase [KO:K01647] [EC:2.3.3.1]
NNO_1443  ATP-citrate (pro-S-)-lyase, subunit 2 [KO:K15230] [EC:2.3.3.8]
NNO_1444  ATP-citrate (pro-S-)-lyase, subunit 1 [KO:K15231] [EC:2.3.3.8]
NNO_0836  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NNO_0843  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NNO_1179  dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
NNO_0851  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NNO_0852  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NNO_0853  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
NNO_0850  2-oxoglutarate oxidoreductase, delta subunit, putative [KO:K00176] [EC:1.2.7.3]
NNO_0848  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
NNO_0847  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
NNO_1113  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NNO_1114  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NNO_1115  putative succinate dehydrogenase cytochrome b subunit [KO:K00241]
NNO_0845  fumarate hydratase class I, aerobic [KO:K01677] [EC:4.2.1.2]
NNO_0846  fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
NNO_0844  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NNO_1377  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NNO_1528  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
NNO_1693  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NNO_1183  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
NNO_1182  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
NNO_1181  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
NNO_0179  pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
NNO_0180  pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
NNO_0178  pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hyo00010  Glycolysis / Gluconeogenesis
hyo00053  Ascorbate and aldarate metabolism
hyo00061  Fatty acid biosynthesis
hyo00190  Oxidative phosphorylation
hyo00220  Arginine biosynthesis
hyo00250  Alanine, aspartate and glutamate metabolism
hyo00280  Valine, leucine and isoleucine degradation
hyo00350  Tyrosine metabolism
hyo00470  D-Amino acid metabolism
hyo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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