KEGG   PATHWAY: iel03008
Entry
iel03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Ischnura elegans (blue-tailed damselfly)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
iel03008  Ribosome biogenesis in eukaryotes
iel03008

Organism
Ischnura elegans (blue-tailed damselfly) [GN:iel]
Gene
124169789  casein kinase II subunit beta [KO:K03115]
124165283  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
124166368  nucleolar protein 6 [KO:K14544]
124169173  ribosomal RNA-processing protein 7 homolog A isoform X1 [KO:K14545]
124166727  WD repeat-containing protein 43 [KO:K14546]
124163348  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
124166556  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
124165829  HEAT repeat-containing protein 1 [KO:K14550]
124159518  WD repeat-containing protein 75 [KO:K14552]
124158838  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
124158711  WD repeat-containing protein 36 [KO:K14554]
124153364  transducin beta-like protein 3 [KO:K14555]
124160730  WD repeat-containing protein 3 [KO:K14556]
124169155  U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
124162332  periodic tryptophan protein 2 homolog [KO:K14558]
124166065  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
124168850  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
124162277  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
124166563  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
124154561  nucleolar protein 56 [KO:K14564]
124167037  nucleolar protein 58 [KO:K14565]
124169481  NHP2-like protein 1 [KO:K12845]
124158970  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
124153959  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
124161051  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
124156989  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
124157516  rRNA-processing protein FCF1 homolog [KO:K14566]
124156315  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
124169020  ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
124156600  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
124159456  ribosome biogenesis protein BMS1 homolog [KO:K14569]
124162938  RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
124170650  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
124154052  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
124156508  ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
124168185  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
124159052  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
124163617  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
124155492  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
124169579  ribonuclease P protein subunit p40-like [KO:K14530] [EC:3.1.26.5]
124169386  uncharacterized protein LOC124169386 isoform X1 [KO:K14570] [EC:3.1.-.-]
124170844  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
124159063  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
124163216  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
124167521  5'-3' exoribonuclease 2 homolog isoform X1 [KO:K12619] [EC:3.1.13.-]
124165603  nucleolar GTP-binding protein 1 [KO:K06943]
124161033  nucleolar GTP-binding protein 2 [KO:K14537]
124160092  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
124158650  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
124162283  RNA-binding protein 28 [KO:K14573]
124168853  RNA-binding protein NOB1 isoform X1 [KO:K11883]
124163257  GTP-binding nuclear protein Ran [KO:K07936]
124157510  exportin-1 [KO:K14290]
124163827  60S ribosomal export protein NMD3 [KO:K07562]
124153811  nuclear RNA export factor 1-like [KO:K14284]
124154245  nuclear RNA export factor 1-like [KO:K14284]
124158914  NTF2-related export protein isoform X1 [KO:K14285]
124155808  eukaryotic translation initiation factor 6 [KO:K03264]
124158488  ribosome maturation protein SBDS [KO:K14574]
124166888  elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
124164555  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
124157017  ATPase family protein 2 homolog [KO:K14575]
124164867  adenylate kinase isoenzyme 6 isoform X1 [KO:K18532] [EC:2.7.4.3]
124163683  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
124166553  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
124173353  small subunit ribosomal RNA [KO:K01979]
124173360  large subunit ribosomal RNA [KO:K01982]
124173357  large subunit ribosomal RNA [KO:K01982]
124173413  large subunit ribosomal RNA [KO:K01982]
124173518  large subunit ribosomal RNA [KO:K01982]
124173770  small nucleolar RNA U3 [KO:K14483]
124154793  small nucleolar RNA U3 [KO:K14483]
124161638  small nucleolar RNA U3 [KO:K14483]
124161614  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
iel03010  Ribosome
KO pathway
ko03008   
LinkDB

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