KEGG   PATHWAY: ima03030
Entry
ima03030                    Pathway                                
Name
DNA replication - Iamia majanohamensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ima03030  DNA replication
ima03030

Organism
Iamia majanohamensis [GN:ima]
Gene
PO878_14165  DEDD exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
PO878_11860  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
PO878_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
PO878_21515  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
PO878_21530  ssb; single-stranded DNA-binding protein [KO:K03111]
PO878_06270  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
PO878_10000  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
PO878_18035  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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