KEGG   PATHWAY: jre00630
Entry
jre00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Juglans regia (English walnut)
Class
Metabolism; Carbohydrate metabolism
Pathway map
jre00630  Glyoxylate and dicarboxylate metabolism
jre00630

Module
jre_M00012  Glyoxylate cycle [PATH:jre00630]
jre_M00532  Photorespiration [PATH:jre00630]
jre_M00621  Glycine cleavage system [PATH:jre00630]
Other DBs
GO: 0046487 0043648
Organism
Juglans regia (English walnut) [GN:jre]
Gene
108985254  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
108996314  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
108982505  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
108991981  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
108982433  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108981475  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
108981044  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
109016129  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
108983369  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
108990441  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108992489  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
108995464  LOW QUALITY PROTEIN: malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
109012566  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108986174  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
108996640  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
109020222  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108980770  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
109006857  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109011649  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108999475  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109003620  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
109000726  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
109011858  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
108983267  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
108990249  peroxisomal (S)-2-hydroxy-acid oxidase-like isoform X1 [KO:K11517] [EC:1.1.3.15]
109001955  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
109001956  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
109002938  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
109002939  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
108982204  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
108990844  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108981831  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
108991176  glyoxylate/succinic semialdehyde reductase 1 isoform X2 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108991678  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
108993417  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
108996570  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
109005470  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
26380801  rbcL; ribulose-1 [KO:K01601] [EC:4.1.1.39]
108988192  ribulose bisphosphate carboxylase small chain, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
108981411  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
109017539  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
108999263  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108994646  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108985586  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108989739  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
108995228  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
109011587  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
108988099  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
108988513  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
108993245  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
108995063  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
109005909  glutamine synthetase leaf isozyme, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
109021470  glutamine synthetase cytosolic isozyme 1 isoform X1 [KO:K01915] [EC:6.3.1.2]
108984655  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
109012448  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
108981297  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
108992466  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
109008438  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
109011697  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
109007018  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
109004915  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
109003384  serine hydroxymethyltransferase 2, mitochondrial isoform X1 [KO:K00600] [EC:2.1.2.1]
109003386  serine hydroxymethyltransferase 2, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
109009676  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
109012562  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
109012601  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
108986181  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
108979233  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
108994825  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
109003585  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
109007409  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
108994095  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
109020964  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
118345732  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
109011010  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
108992808  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
108997022  formate dehydrogenase, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
108994330  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
108988557  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
108998601  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
108997073  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
109014451  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
jre00010  Glycolysis / Gluconeogenesis
jre00020  Citrate cycle (TCA cycle)
jre00030  Pentose phosphate pathway
jre00053  Ascorbate and aldarate metabolism
jre00071  Fatty acid degradation
jre00230  Purine metabolism
jre00250  Alanine, aspartate and glutamate metabolism
jre00260  Glycine, serine and threonine metabolism
jre00620  Pyruvate metabolism
jre00710  Carbon fixation in photosynthetic organisms
jre00750  Vitamin B6 metabolism
jre00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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