KEGG   PATHWAY: kcr00020
Entry
kcr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Korarchaeum cryptofilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kcr00020  Citrate cycle (TCA cycle)
kcr00020

Module
kcr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kcr00020]
kcr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kcr00020]
Other DBs
GO: 0006099
Organism
Candidatus Korarchaeum cryptofilum [GN:kcr]
Gene
Kcr_0973  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
Kcr_0970  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Kcr_1262  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Kcr_1263  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Kcr_1265  2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Kcr_1264  Ferredoxin [KO:K00176] [EC:1.2.7.3]
Kcr_1393  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Kcr_1392  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Kcr_1168  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Kcr_1171  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Kcr_1169  Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
Kcr_1170  Succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
Kcr_0093  Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain protein [KO:K01677] [EC:4.2.1.2]
Kcr_0094  Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain protein [KO:K01678] [EC:4.2.1.2]
Kcr_0317  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Kcr_1228  Pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Kcr_1292  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Kcr_1293  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Kcr_1229  Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Kcr_1226  Pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Kcr_1525  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Kcr_1227  Pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Kcr_1291  2-oxoacid:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kcr00010  Glycolysis / Gluconeogenesis
kcr00061  Fatty acid biosynthesis
kcr00071  Fatty acid degradation
kcr00190  Oxidative phosphorylation
kcr00220  Arginine biosynthesis
kcr00250  Alanine, aspartate and glutamate metabolism
kcr00280  Valine, leucine and isoleucine degradation
kcr00470  D-Amino acid metabolism
kcr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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