KEGG   PATHWAY: lbo00020
Entry
lbo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptolyngbya boryana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lbo00020  Citrate cycle (TCA cycle)
lbo00020

Module
lbo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lbo00020]
lbo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lbo00020]
Other DBs
GO: 0006099
Organism
Leptolyngbya boryana [GN:lbo]
Gene
LBWT_46290  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
LBWT_15380  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LBWT_46780  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LBWT_30110  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LBWT_40160  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
LBWT_40150  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
LBWT_18760  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
LBWT_14910  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
LBWT_44970  heterodisulfide reductase subunit B [KO:K00241]
LBWT_37190  fumarase, class II [KO:K01679] [EC:4.2.1.2]
LBWT_10410  malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LBWT_53590  malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
LBWT_7290  pyruvate dehydrogenase, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
LBWT_54210  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
LBWT_48080  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
LBWT_7280  pyruvate dehydrogenase, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
LBWT_6640  hypothetical protein [KO:K00627] [EC:2.3.1.12]
LBWT_7270  pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lbo00010  Glycolysis / Gluconeogenesis
lbo00053  Ascorbate and aldarate metabolism
lbo00061  Fatty acid biosynthesis
lbo00071  Fatty acid degradation
lbo00190  Oxidative phosphorylation
lbo00220  Arginine biosynthesis
lbo00250  Alanine, aspartate and glutamate metabolism
lbo00280  Valine, leucine and isoleucine degradation
lbo00350  Tyrosine metabolism
lbo00470  D-Amino acid metabolism
lbo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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