KEGG   PATHWAY: lcap00630
Entry
lcap00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lysinibacillus capsici
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcap00630  Glyoxylate and dicarboxylate metabolism
lcap00630

Module
lcap_M00012  Glyoxylate cycle [PATH:lcap00630]
lcap_M00621  Glycine cleavage system [PATH:lcap00630]
Other DBs
GO: 0046487 0043648
Organism
Lysinibacillus capsici [GN:lcap]
Gene
ICJ70_23865  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
ICJ70_01755  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
ICJ70_06840  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
ICJ70_06955  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
ICJ70_23860  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
ICJ70_15380  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_16695  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_07065  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_07055  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
ICJ70_11650  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ICJ70_18325  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
ICJ70_21630  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
ICJ70_05210  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
ICJ70_07070  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
ICJ70_09655  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
ICJ70_09660  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
ICJ70_09630  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ICJ70_09625  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
ICJ70_05160  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
ICJ70_05165  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
ICJ70_20550  catalase [KO:K03781] [EC:1.11.1.6]
ICJ70_23385  catalase [KO:K03781] [EC:1.11.1.6]
ICJ70_03490  catalase [KO:K03781] [EC:1.11.1.6]
ICJ70_04540  catalase [KO:K03781] [EC:1.11.1.6]
ICJ70_22480  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
ICJ70_17050  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
ICJ70_18375  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
ICJ70_15440  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
ICJ70_18145  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
ICJ70_18580  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
ICJ70_21470  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ICJ70_09295  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
ICJ70_10585  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
ICJ70_09300  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
ICJ70_10590  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
ICJ70_09290  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
ICJ70_09605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_13910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_20130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_20545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_05680  gcvH; glycine cleavage system protein GcvH [KO:K02437]
ICJ70_04680  glycerate kinase [KO:K00865] [EC:2.7.1.165]
ICJ70_16300  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ICJ70_19920  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ICJ70_11705  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
ICJ70_10630  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
ICJ70_23535  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lcap00010  Glycolysis / Gluconeogenesis
lcap00020  Citrate cycle (TCA cycle)
lcap00030  Pentose phosphate pathway
lcap00053  Ascorbate and aldarate metabolism
lcap00071  Fatty acid degradation
lcap00230  Purine metabolism
lcap00250  Alanine, aspartate and glutamate metabolism
lcap00260  Glycine, serine and threonine metabolism
lcap00620  Pyruvate metabolism
lcap00710  Carbon fixation by Calvin cycle
lcap00750  Vitamin B6 metabolism
lcap00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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